Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0943

Experiment: Pyruvate-Sulfite (60-20mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfur and DVU0943 are separated by 493 nucleotidesDVU0943 and DVU0944 are separated by 53 nucleotidesDVU0944 and DVU0945 are separated by 85 nucleotides DVU0942: fur - ferric uptake regulator (Dmitry Rodionov), at 1,034,493 to 1,034,927 fur DVU0943: DVU0943 - membrane protein, putative (TIGR), at 1,035,421 to 1,037,160 DVU0943 DVU0944: DVU0944 - hypothetical protein (TIGR), at 1,037,214 to 1,037,471 DVU0944 DVU0945: DVU0945 - sensor histidine kinase (TIGR), at 1,037,557 to 1,039,989 DVU0945 Position (kb) 1035 1036 1037 1038Strain fitness (log2 ratio) -3 -2 -1 0 1at 1034.450 kb on + strandat 1034.463 kb on - strandat 1034.934 kb on - strandat 1034.937 kb on + strandat 1034.957 kb on - strandat 1035.017 kb on + strandat 1035.101 kb on + strandat 1035.109 kb on - strandat 1035.124 kb on - strandat 1035.158 kb on + strandat 1035.196 kb on + strandat 1035.199 kb on - strandat 1035.259 kb on + strandat 1035.581 kb on + strandat 1035.594 kb on - strandat 1035.605 kb on + strand, within DVU0943at 1035.638 kb on - strand, within DVU0943at 1035.648 kb on + strand, within DVU0943at 1035.656 kb on - strand, within DVU0943at 1035.675 kb on + strand, within DVU0943at 1035.683 kb on - strand, within DVU0943at 1035.683 kb on - strand, within DVU0943at 1035.792 kb on + strand, within DVU0943at 1035.927 kb on + strand, within DVU0943at 1035.927 kb on + strand, within DVU0943at 1036.043 kb on - strand, within DVU0943at 1036.050 kb on - strand, within DVU0943at 1036.076 kb on - strand, within DVU0943at 1036.140 kb on + strand, within DVU0943at 1036.152 kb on + strand, within DVU0943at 1036.160 kb on + strand, within DVU0943at 1036.167 kb on + strand, within DVU0943at 1036.286 kb on + strand, within DVU0943at 1036.294 kb on - strand, within DVU0943at 1036.503 kb on - strand, within DVU0943at 1036.523 kb on - strand, within DVU0943at 1036.557 kb on - strand, within DVU0943at 1036.625 kb on + strand, within DVU0943at 1036.625 kb on + strand, within DVU0943at 1036.833 kb on - strand, within DVU0943at 1036.912 kb on - strand, within DVU0943at 1036.920 kb on + strand, within DVU0943at 1036.920 kb on + strand, within DVU0943at 1036.941 kb on + strand, within DVU0943at 1036.947 kb on - strand, within DVU0943at 1037.069 kb on + strandat 1037.081 kb on + strandat 1037.081 kb on + strandat 1037.129 kb on - strandat 1037.222 kb on + strandat 1037.341 kb on - strand, within DVU0944at 1037.371 kb on - strand, within DVU0944at 1037.371 kb on - strand, within DVU0944at 1037.417 kb on - strand, within DVU0944at 1037.452 kb on + strandat 1037.611 kb on - strandat 1037.643 kb on - strandat 1037.686 kb on + strandat 1037.688 kb on - strandat 1037.736 kb on - strandat 1037.736 kb on - strandat 1037.766 kb on + strandat 1037.891 kb on + strand, within DVU0945at 1037.999 kb on - strand, within DVU0945at 1038.042 kb on + strand, within DVU0945at 1038.045 kb on - strand, within DVU0945at 1038.086 kb on - strand, within DVU0945

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Selenate 750uM
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1,034,450 + -0.3
1,034,463 - -0.1
1,034,934 - -3.1
1,034,937 + -2.5
1,034,957 - -0.3
1,035,017 + -0.8
1,035,101 + -0.7
1,035,109 - +0.1
1,035,124 - +0.6
1,035,158 + -0.3
1,035,196 + -0.3
1,035,199 - +0.2
1,035,259 + -0.7
1,035,581 + -0.6
1,035,594 - -0.6
1,035,605 + DVU0943 0.11 -0.5
1,035,638 - DVU0943 0.12 -0.2
1,035,648 + DVU0943 0.13 +1.0
1,035,656 - DVU0943 0.14 -0.3
1,035,675 + DVU0943 0.15 -0.2
1,035,683 - DVU0943 0.15 -0.5
1,035,683 - DVU0943 0.15 -1.2
1,035,792 + DVU0943 0.21 -0.1
1,035,927 + DVU0943 0.29 -0.6
1,035,927 + DVU0943 0.29 -0.2
1,036,043 - DVU0943 0.36 -0.8
1,036,050 - DVU0943 0.36 -2.1
1,036,076 - DVU0943 0.38 -0.6
1,036,140 + DVU0943 0.41 -0.1
1,036,152 + DVU0943 0.42 -0.4
1,036,160 + DVU0943 0.42 -0.7
1,036,167 + DVU0943 0.43 -0.3
1,036,286 + DVU0943 0.50 -0.4
1,036,294 - DVU0943 0.50 +0.0
1,036,503 - DVU0943 0.62 -0.8
1,036,523 - DVU0943 0.63 +0.6
1,036,557 - DVU0943 0.65 -0.6
1,036,625 + DVU0943 0.69 -0.8
1,036,625 + DVU0943 0.69 +1.2
1,036,833 - DVU0943 0.81 -0.7
1,036,912 - DVU0943 0.86 +1.3
1,036,920 + DVU0943 0.86 -0.1
1,036,920 + DVU0943 0.86 +0.2
1,036,941 + DVU0943 0.87 -0.6
1,036,947 - DVU0943 0.88 -0.5
1,037,069 + +0.2
1,037,081 + -0.4
1,037,081 + -0.7
1,037,129 - -0.1
1,037,222 + -1.1
1,037,341 - DVU0944 0.49 -1.7
1,037,371 - DVU0944 0.61 +1.3
1,037,371 - DVU0944 0.61 -0.8
1,037,417 - DVU0944 0.79 -1.1
1,037,452 + -0.2
1,037,611 - +0.1
1,037,643 - -1.0
1,037,686 + -2.0
1,037,688 - -0.4
1,037,736 - -0.1
1,037,736 - -0.5
1,037,766 + -0.4
1,037,891 + DVU0945 0.14 -0.1
1,037,999 - DVU0945 0.18 -0.3
1,038,042 + DVU0945 0.20 +0.8
1,038,045 - DVU0945 0.20 -0.0
1,038,086 - DVU0945 0.22 -0.1

Or see this region's nucleotide sequence