Experiment: BG11 with Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mraY and Synpcc7942_0153 are separated by 14 nucleotides Synpcc7942_0153 and Synpcc7942_0154 are separated by 32 nucleotides Synpcc7942_0154 and Synpcc7942_0155 overlap by 4 nucleotides Synpcc7942_0155 and Synpcc7942_0156 are separated by 25 nucleotides
Synpcc7942_0152: mraY - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 154,914 to 156,011
mraY
Synpcc7942_0153: Synpcc7942_0153 - hypothetical protein, at 156,026 to 156,307
_0153
Synpcc7942_0154: Synpcc7942_0154 - hypothetical protein, at 156,340 to 156,957
_0154
Synpcc7942_0155: Synpcc7942_0155 - hypothetical protein, at 156,954 to 157,184
_0155
Synpcc7942_0156: Synpcc7942_0156 - phosphoglucomutase, at 157,210 to 158,841
_0156
Position (kb) 156
157
158 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 156.009 kb on - strand at 156.009 kb on - strand at 156.014 kb on + strand at 156.332 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.410 kb on + strand, within Synpcc7942_0154 at 156.431 kb on + strand, within Synpcc7942_0154 at 156.431 kb on + strand, within Synpcc7942_0154 at 156.434 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.449 kb on + strand, within Synpcc7942_0154 at 156.449 kb on + strand, within Synpcc7942_0154 at 156.470 kb on + strand, within Synpcc7942_0154 at 156.512 kb on - strand, within Synpcc7942_0154 at 156.512 kb on - strand, within Synpcc7942_0154 at 156.525 kb on + strand, within Synpcc7942_0154 at 156.525 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.549 kb on + strand, within Synpcc7942_0154 at 156.569 kb on - strand, within Synpcc7942_0154 at 156.571 kb on - strand, within Synpcc7942_0154 at 156.571 kb on - strand, within Synpcc7942_0154 at 156.572 kb on + strand, within Synpcc7942_0154 at 156.576 kb on - strand, within Synpcc7942_0154 at 156.590 kb on - strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.607 kb on - strand, within Synpcc7942_0154 at 156.629 kb on + strand, within Synpcc7942_0154 at 156.637 kb on - strand, within Synpcc7942_0154 at 156.637 kb on - strand, within Synpcc7942_0154 at 156.657 kb on - strand, within Synpcc7942_0154 at 156.659 kb on - strand, within Synpcc7942_0154 at 156.661 kb on + strand, within Synpcc7942_0154 at 156.692 kb on - strand, within Synpcc7942_0154 at 156.719 kb on + strand, within Synpcc7942_0154 at 156.758 kb on - strand, within Synpcc7942_0154 at 156.782 kb on - strand, within Synpcc7942_0154 at 156.851 kb on - strand, within Synpcc7942_0154 at 156.857 kb on + strand, within Synpcc7942_0154 at 156.867 kb on + strand, within Synpcc7942_0154 at 156.878 kb on + strand, within Synpcc7942_0154 at 156.878 kb on + strand, within Synpcc7942_0154 at 156.904 kb on + strand at 156.933 kb on + strand at 156.933 kb on + strand at 156.933 kb on + strand at 156.941 kb on - strand at 156.941 kb on - strand at 156.941 kb on - strand at 156.963 kb on + strand at 156.976 kb on - strand at 156.989 kb on - strand, within Synpcc7942_0155 at 156.992 kb on + strand, within Synpcc7942_0155 at 157.004 kb on + strand, within Synpcc7942_0155 at 157.020 kb on - strand, within Synpcc7942_0155 at 157.087 kb on - strand, within Synpcc7942_0155 at 157.109 kb on + strand, within Synpcc7942_0155 at 157.109 kb on + strand, within Synpcc7942_0155 at 157.117 kb on - strand, within Synpcc7942_0155 at 157.159 kb on - strand, within Synpcc7942_0155 at 157.178 kb on + strand at 157.178 kb on + strand at 157.184 kb on + strand at 157.207 kb on + strand at 157.214 kb on - strand at 157.248 kb on - strand at 157.255 kb on - strand at 157.317 kb on + strand at 157.512 kb on + strand, within Synpcc7942_0156 at 157.527 kb on + strand, within Synpcc7942_0156 at 157.625 kb on - strand, within Synpcc7942_0156 at 157.630 kb on + strand, within Synpcc7942_0156 at 157.700 kb on + strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.829 kb on + strand, within Synpcc7942_0156 at 157.870 kb on + strand, within Synpcc7942_0156 at 157.882 kb on - strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.907 kb on - strand, within Synpcc7942_0156 at 158.152 kb on + strand, within Synpcc7942_0156
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.025 mg/ml remove 156,009 - +0.6 156,009 - -1.4 156,014 + +1.1 156,332 - -0.5 156,366 - -0.9 156,366 - +0.1 156,366 - +0.1 156,366 - -0.3 156,410 + Synpcc7942_0154 0.11 -0.1 156,431 + Synpcc7942_0154 0.15 -0.3 156,431 + Synpcc7942_0154 0.15 +0.8 156,434 - Synpcc7942_0154 0.15 +0.6 156,439 - Synpcc7942_0154 0.16 +0.9 156,439 - Synpcc7942_0154 0.16 -0.1 156,439 - Synpcc7942_0154 0.16 -0.2 156,449 + Synpcc7942_0154 0.18 +0.6 156,449 + Synpcc7942_0154 0.18 -0.9 156,470 + Synpcc7942_0154 0.21 -0.5 156,512 - Synpcc7942_0154 0.28 -0.7 156,512 - Synpcc7942_0154 0.28 -0.4 156,525 + Synpcc7942_0154 0.30 +0.6 156,525 + Synpcc7942_0154 0.30 -0.8 156,539 + Synpcc7942_0154 0.32 -1.8 156,539 + Synpcc7942_0154 0.32 -1.7 156,539 + Synpcc7942_0154 0.32 -1.6 156,549 + Synpcc7942_0154 0.34 -0.1 156,569 - Synpcc7942_0154 0.37 +0.6 156,571 - Synpcc7942_0154 0.37 -1.1 156,571 - Synpcc7942_0154 0.37 -1.0 156,572 + Synpcc7942_0154 0.38 +0.1 156,576 - Synpcc7942_0154 0.38 +0.2 156,590 - Synpcc7942_0154 0.40 +0.0 156,599 + Synpcc7942_0154 0.42 -0.3 156,599 + Synpcc7942_0154 0.42 +1.1 156,599 + Synpcc7942_0154 0.42 -0.5 156,607 - Synpcc7942_0154 0.43 -0.3 156,629 + Synpcc7942_0154 0.47 -0.6 156,637 - Synpcc7942_0154 0.48 +0.9 156,637 - Synpcc7942_0154 0.48 +1.9 156,657 - Synpcc7942_0154 0.51 -0.8 156,659 - Synpcc7942_0154 0.52 +0.1 156,661 + Synpcc7942_0154 0.52 -2.1 156,692 - Synpcc7942_0154 0.57 -0.3 156,719 + Synpcc7942_0154 0.61 +0.1 156,758 - Synpcc7942_0154 0.68 +0.1 156,782 - Synpcc7942_0154 0.72 -1.1 156,851 - Synpcc7942_0154 0.83 +0.1 156,857 + Synpcc7942_0154 0.84 +0.7 156,867 + Synpcc7942_0154 0.85 +0.5 156,878 + Synpcc7942_0154 0.87 +0.6 156,878 + Synpcc7942_0154 0.87 +0.9 156,904 + +0.8 156,933 + +0.6 156,933 + -0.6 156,933 + -0.4 156,941 - +0.2 156,941 - +0.1 156,941 - -1.2 156,963 + -0.4 156,976 - +0.0 156,989 - Synpcc7942_0155 0.15 +0.4 156,992 + Synpcc7942_0155 0.16 +1.6 157,004 + Synpcc7942_0155 0.22 +0.2 157,020 - Synpcc7942_0155 0.29 +1.1 157,087 - Synpcc7942_0155 0.58 +0.4 157,109 + Synpcc7942_0155 0.67 +0.2 157,109 + Synpcc7942_0155 0.67 +0.9 157,117 - Synpcc7942_0155 0.71 +0.3 157,159 - Synpcc7942_0155 0.89 -0.6 157,178 + -0.9 157,178 + +0.7 157,184 + +0.7 157,207 + -0.3 157,214 - -1.9 157,248 - -1.8 157,255 - -4.3 157,317 + -1.8 157,512 + Synpcc7942_0156 0.19 -1.8 157,527 + Synpcc7942_0156 0.19 -1.6 157,625 - Synpcc7942_0156 0.25 -1.5 157,630 + Synpcc7942_0156 0.26 -2.1 157,700 + Synpcc7942_0156 0.30 -3.2 157,737 - Synpcc7942_0156 0.32 -2.6 157,737 - Synpcc7942_0156 0.32 -2.8 157,737 - Synpcc7942_0156 0.32 -1.5 157,829 + Synpcc7942_0156 0.38 -4.1 157,870 + Synpcc7942_0156 0.40 -2.9 157,882 - Synpcc7942_0156 0.41 -2.8 157,889 + Synpcc7942_0156 0.42 -1.0 157,889 + Synpcc7942_0156 0.42 -4.3 157,889 + Synpcc7942_0156 0.42 -3.1 157,897 - Synpcc7942_0156 0.42 -1.6 157,897 - Synpcc7942_0156 0.42 -3.2 157,897 - Synpcc7942_0156 0.42 -2.7 157,907 - Synpcc7942_0156 0.43 -1.5 158,152 + Synpcc7942_0156 0.58 -2.0
Or see this region's nucleotide sequence