Experiment: BG11 with Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt psfR and mraY overlap by 4 nucleotides mraY and Synpcc7942_0153 are separated by 14 nucleotides Synpcc7942_0153 and Synpcc7942_0154 are separated by 32 nucleotides Synpcc7942_0154 and Synpcc7942_0155 overlap by 4 nucleotides
Synpcc7942_0151: psfR - response regulator receiver modulated diguanylate cyclase, at 152,527 to 154,917
psfR
Synpcc7942_0152: mraY - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 154,914 to 156,011
mraY
Synpcc7942_0153: Synpcc7942_0153 - hypothetical protein, at 156,026 to 156,307
_0153
Synpcc7942_0154: Synpcc7942_0154 - hypothetical protein, at 156,340 to 156,957
_0154
Synpcc7942_0155: Synpcc7942_0155 - hypothetical protein, at 156,954 to 157,184
_0155
Position (kb) 154
155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.947 kb on + strand, within psfR at 153.952 kb on + strand, within psfR at 153.955 kb on - strand, within psfR at 153.967 kb on - strand, within psfR at 153.997 kb on + strand, within psfR at 154.005 kb on - strand at 154.007 kb on - strand, within psfR at 154.011 kb on + strand, within psfR at 154.019 kb on - strand, within psfR at 154.054 kb on - strand, within psfR at 154.054 kb on - strand, within psfR at 154.066 kb on + strand, within psfR at 154.066 kb on + strand, within psfR at 154.073 kb on - strand, within psfR at 154.074 kb on - strand, within psfR at 154.074 kb on - strand, within psfR at 154.138 kb on + strand, within psfR at 154.146 kb on - strand, within psfR at 154.168 kb on + strand, within psfR at 154.176 kb on - strand, within psfR at 154.190 kb on + strand, within psfR at 154.198 kb on - strand, within psfR at 154.212 kb on + strand, within psfR at 154.271 kb on + strand, within psfR at 154.279 kb on - strand, within psfR at 154.289 kb on - strand, within psfR at 154.320 kb on - strand, within psfR at 154.325 kb on - strand, within psfR at 154.325 kb on - strand, within psfR at 154.422 kb on - strand, within psfR at 154.435 kb on - strand, within psfR at 154.435 kb on - strand, within psfR at 154.435 kb on - strand, within psfR at 154.454 kb on - strand, within psfR at 154.456 kb on - strand, within psfR at 154.459 kb on + strand, within psfR at 154.462 kb on - strand, within psfR at 154.464 kb on + strand, within psfR at 154.467 kb on - strand, within psfR at 154.467 kb on - strand, within psfR at 154.477 kb on + strand, within psfR at 154.479 kb on - strand, within psfR at 154.484 kb on + strand at 154.484 kb on - strand, within psfR at 154.485 kb on - strand, within psfR at 154.485 kb on - strand, within psfR at 154.532 kb on + strand, within psfR at 154.540 kb on - strand, within psfR at 154.579 kb on - strand, within psfR at 154.595 kb on + strand, within psfR at 154.694 kb on - strand at 154.694 kb on - strand at 154.694 kb on - strand at 154.707 kb on + strand at 154.707 kb on + strand at 154.715 kb on - strand at 154.748 kb on - strand at 154.757 kb on + strand at 154.757 kb on + strand at 154.765 kb on - strand at 154.795 kb on - strand at 154.805 kb on - strand at 154.814 kb on - strand at 154.825 kb on + strand at 154.833 kb on - strand at 154.840 kb on + strand at 154.859 kb on + strand at 154.859 kb on + strand at 154.867 kb on - strand at 154.883 kb on + strand at 154.892 kb on - strand at 154.911 kb on - strand at 156.009 kb on - strand at 156.009 kb on - strand at 156.014 kb on + strand at 156.332 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.410 kb on + strand, within Synpcc7942_0154 at 156.431 kb on + strand, within Synpcc7942_0154 at 156.431 kb on + strand, within Synpcc7942_0154 at 156.434 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.449 kb on + strand, within Synpcc7942_0154 at 156.449 kb on + strand, within Synpcc7942_0154 at 156.470 kb on + strand, within Synpcc7942_0154 at 156.512 kb on - strand, within Synpcc7942_0154 at 156.512 kb on - strand, within Synpcc7942_0154 at 156.525 kb on + strand, within Synpcc7942_0154 at 156.525 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.549 kb on + strand, within Synpcc7942_0154 at 156.569 kb on - strand, within Synpcc7942_0154 at 156.571 kb on - strand, within Synpcc7942_0154 at 156.571 kb on - strand, within Synpcc7942_0154 at 156.572 kb on + strand, within Synpcc7942_0154 at 156.576 kb on - strand, within Synpcc7942_0154 at 156.590 kb on - strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.607 kb on - strand, within Synpcc7942_0154 at 156.629 kb on + strand, within Synpcc7942_0154 at 156.637 kb on - strand, within Synpcc7942_0154 at 156.637 kb on - strand, within Synpcc7942_0154 at 156.657 kb on - strand, within Synpcc7942_0154 at 156.659 kb on - strand, within Synpcc7942_0154 at 156.661 kb on + strand, within Synpcc7942_0154 at 156.692 kb on - strand, within Synpcc7942_0154 at 156.719 kb on + strand, within Synpcc7942_0154 at 156.758 kb on - strand, within Synpcc7942_0154 at 156.782 kb on - strand, within Synpcc7942_0154 at 156.851 kb on - strand, within Synpcc7942_0154 at 156.857 kb on + strand, within Synpcc7942_0154 at 156.867 kb on + strand, within Synpcc7942_0154 at 156.878 kb on + strand, within Synpcc7942_0154 at 156.878 kb on + strand, within Synpcc7942_0154 at 156.904 kb on + strand at 156.933 kb on + strand at 156.933 kb on + strand at 156.933 kb on + strand at 156.941 kb on - strand at 156.941 kb on - strand at 156.941 kb on - strand at 156.963 kb on + strand at 156.976 kb on - strand at 156.989 kb on - strand, within Synpcc7942_0155 at 156.992 kb on + strand, within Synpcc7942_0155 at 157.004 kb on + strand, within Synpcc7942_0155
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.025 mg/ml remove 153,947 + psfR Synpcc7942_0151 0.59 +0.8 153,952 + psfR Synpcc7942_0151 0.60 -0.0 153,955 - psfR Synpcc7942_0151 0.60 +0.8 153,967 - psfR Synpcc7942_0151 0.60 -0.1 153,997 + psfR Synpcc7942_0151 0.61 -0.4 154,005 - +1.2 154,007 - psfR Synpcc7942_0151 0.62 -1.9 154,011 + psfR Synpcc7942_0151 0.62 +0.4 154,019 - psfR Synpcc7942_0151 0.62 -1.1 154,054 - psfR Synpcc7942_0151 0.64 -1.6 154,054 - psfR Synpcc7942_0151 0.64 -1.1 154,066 + psfR Synpcc7942_0151 0.64 +0.0 154,066 + psfR Synpcc7942_0151 0.64 +0.9 154,073 - psfR Synpcc7942_0151 0.65 +0.1 154,074 - psfR Synpcc7942_0151 0.65 +0.7 154,074 - psfR Synpcc7942_0151 0.65 -1.0 154,138 + psfR Synpcc7942_0151 0.67 +2.0 154,146 - psfR Synpcc7942_0151 0.68 +0.6 154,168 + psfR Synpcc7942_0151 0.69 -0.3 154,176 - psfR Synpcc7942_0151 0.69 -0.9 154,190 + psfR Synpcc7942_0151 0.70 -0.5 154,198 - psfR Synpcc7942_0151 0.70 +0.4 154,212 + psfR Synpcc7942_0151 0.70 +0.1 154,271 + psfR Synpcc7942_0151 0.73 +0.4 154,279 - psfR Synpcc7942_0151 0.73 +0.2 154,289 - psfR Synpcc7942_0151 0.74 -0.8 154,320 - psfR Synpcc7942_0151 0.75 +0.3 154,325 - psfR Synpcc7942_0151 0.75 -0.3 154,325 - psfR Synpcc7942_0151 0.75 +0.4 154,422 - psfR Synpcc7942_0151 0.79 -0.1 154,435 - psfR Synpcc7942_0151 0.80 +1.0 154,435 - psfR Synpcc7942_0151 0.80 +0.9 154,435 - psfR Synpcc7942_0151 0.80 -0.5 154,454 - psfR Synpcc7942_0151 0.81 -1.0 154,456 - psfR Synpcc7942_0151 0.81 -0.4 154,459 + psfR Synpcc7942_0151 0.81 -0.8 154,462 - psfR Synpcc7942_0151 0.81 +1.2 154,464 + psfR Synpcc7942_0151 0.81 -0.9 154,467 - psfR Synpcc7942_0151 0.81 -0.6 154,467 - psfR Synpcc7942_0151 0.81 -0.4 154,477 + psfR Synpcc7942_0151 0.82 -0.4 154,479 - psfR Synpcc7942_0151 0.82 +0.3 154,484 + +1.2 154,484 - psfR Synpcc7942_0151 0.82 +0.4 154,485 - psfR Synpcc7942_0151 0.82 -0.3 154,485 - psfR Synpcc7942_0151 0.82 +0.0 154,532 + psfR Synpcc7942_0151 0.84 -0.9 154,540 - psfR Synpcc7942_0151 0.84 -1.5 154,579 - psfR Synpcc7942_0151 0.86 +0.6 154,595 + psfR Synpcc7942_0151 0.86 -1.4 154,694 - +0.3 154,694 - +0.2 154,694 - -0.1 154,707 + +0.7 154,707 + +0.1 154,715 - +0.2 154,748 - -0.5 154,757 + +1.4 154,757 + +0.4 154,765 - +0.2 154,795 - +0.0 154,805 - -0.6 154,814 - +0.2 154,825 + -3.2 154,833 - +0.8 154,840 + +1.3 154,859 + -0.2 154,859 + -0.1 154,867 - -0.2 154,883 + -0.2 154,892 - -0.0 154,911 - -1.3 156,009 - +0.6 156,009 - -1.4 156,014 + +1.1 156,332 - -0.5 156,366 - -0.9 156,366 - +0.1 156,366 - +0.1 156,366 - -0.3 156,410 + Synpcc7942_0154 0.11 -0.1 156,431 + Synpcc7942_0154 0.15 -0.3 156,431 + Synpcc7942_0154 0.15 +0.8 156,434 - Synpcc7942_0154 0.15 +0.6 156,439 - Synpcc7942_0154 0.16 +0.9 156,439 - Synpcc7942_0154 0.16 -0.1 156,439 - Synpcc7942_0154 0.16 -0.2 156,449 + Synpcc7942_0154 0.18 +0.6 156,449 + Synpcc7942_0154 0.18 -0.9 156,470 + Synpcc7942_0154 0.21 -0.5 156,512 - Synpcc7942_0154 0.28 -0.7 156,512 - Synpcc7942_0154 0.28 -0.4 156,525 + Synpcc7942_0154 0.30 +0.6 156,525 + Synpcc7942_0154 0.30 -0.8 156,539 + Synpcc7942_0154 0.32 -1.8 156,539 + Synpcc7942_0154 0.32 -1.7 156,539 + Synpcc7942_0154 0.32 -1.6 156,549 + Synpcc7942_0154 0.34 -0.1 156,569 - Synpcc7942_0154 0.37 +0.6 156,571 - Synpcc7942_0154 0.37 -1.1 156,571 - Synpcc7942_0154 0.37 -1.0 156,572 + Synpcc7942_0154 0.38 +0.1 156,576 - Synpcc7942_0154 0.38 +0.2 156,590 - Synpcc7942_0154 0.40 +0.0 156,599 + Synpcc7942_0154 0.42 -0.3 156,599 + Synpcc7942_0154 0.42 +1.1 156,599 + Synpcc7942_0154 0.42 -0.5 156,607 - Synpcc7942_0154 0.43 -0.3 156,629 + Synpcc7942_0154 0.47 -0.6 156,637 - Synpcc7942_0154 0.48 +0.9 156,637 - Synpcc7942_0154 0.48 +1.9 156,657 - Synpcc7942_0154 0.51 -0.8 156,659 - Synpcc7942_0154 0.52 +0.1 156,661 + Synpcc7942_0154 0.52 -2.1 156,692 - Synpcc7942_0154 0.57 -0.3 156,719 + Synpcc7942_0154 0.61 +0.1 156,758 - Synpcc7942_0154 0.68 +0.1 156,782 - Synpcc7942_0154 0.72 -1.1 156,851 - Synpcc7942_0154 0.83 +0.1 156,857 + Synpcc7942_0154 0.84 +0.7 156,867 + Synpcc7942_0154 0.85 +0.5 156,878 + Synpcc7942_0154 0.87 +0.6 156,878 + Synpcc7942_0154 0.87 +0.9 156,904 + +0.8 156,933 + +0.6 156,933 + -0.6 156,933 + -0.4 156,941 - +0.2 156,941 - +0.1 156,941 - -1.2 156,963 + -0.4 156,976 - +0.0 156,989 - Synpcc7942_0155 0.15 +0.4 156,992 + Synpcc7942_0155 0.16 +1.6 157,004 + Synpcc7942_0155 0.22 +0.2
Or see this region's nucleotide sequence