Experiment: Zinc chloride 0.0000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_859 and Pf6N2E2_860 are separated by 60 nucleotides Pf6N2E2_860 and Pf6N2E2_861 are separated by 123 nucleotides
Pf6N2E2_859 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26), at 1,006,037 to 1,007,617
_859
Pf6N2E2_860 - Altronate dehydratase (EC 4.2.1.7), at 1,007,678 to 1,009,225
_860
Pf6N2E2_861 - Transcriptional regulator, LysR family, at 1,009,349 to 1,010,371
_861
Position (kb)
1007
1008
1009
1010 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1006.766 kb on - strand, within Pf6N2E2_859 at 1006.934 kb on + strand, within Pf6N2E2_859 at 1006.962 kb on + strand, within Pf6N2E2_859 at 1006.963 kb on - strand, within Pf6N2E2_859 at 1007.047 kb on + strand, within Pf6N2E2_859 at 1007.140 kb on + strand, within Pf6N2E2_859 at 1007.141 kb on - strand, within Pf6N2E2_859 at 1007.141 kb on - strand, within Pf6N2E2_859 at 1007.141 kb on - strand, within Pf6N2E2_859 at 1007.299 kb on + strand, within Pf6N2E2_859 at 1007.300 kb on - strand, within Pf6N2E2_859 at 1007.300 kb on - strand, within Pf6N2E2_859 at 1007.384 kb on + strand, within Pf6N2E2_859 at 1007.384 kb on + strand, within Pf6N2E2_859 at 1007.384 kb on + strand, within Pf6N2E2_859 at 1007.385 kb on - strand, within Pf6N2E2_859 at 1007.385 kb on - strand, within Pf6N2E2_859 at 1007.514 kb on + strand at 1007.515 kb on - strand at 1007.519 kb on + strand at 1007.519 kb on + strand at 1007.519 kb on + strand at 1007.647 kb on + strand at 1007.647 kb on + strand at 1007.647 kb on + strand at 1007.647 kb on + strand at 1007.647 kb on + strand at 1007.647 kb on + strand at 1007.647 kb on + strand at 1007.647 kb on + strand at 1007.647 kb on + strand at 1007.648 kb on - strand at 1007.648 kb on - strand at 1007.648 kb on - strand at 1007.648 kb on - strand at 1007.648 kb on - strand at 1007.878 kb on + strand, within Pf6N2E2_860 at 1007.919 kb on + strand, within Pf6N2E2_860 at 1007.920 kb on - strand, within Pf6N2E2_860 at 1007.997 kb on + strand, within Pf6N2E2_860 at 1007.998 kb on - strand, within Pf6N2E2_860 at 1008.055 kb on - strand, within Pf6N2E2_860 at 1008.055 kb on - strand, within Pf6N2E2_860 at 1008.155 kb on - strand, within Pf6N2E2_860 at 1008.155 kb on - strand, within Pf6N2E2_860 at 1008.176 kb on - strand, within Pf6N2E2_860 at 1008.186 kb on + strand, within Pf6N2E2_860 at 1008.187 kb on - strand, within Pf6N2E2_860 at 1008.274 kb on - strand, within Pf6N2E2_860 at 1008.274 kb on - strand, within Pf6N2E2_860 at 1008.359 kb on - strand, within Pf6N2E2_860 at 1008.370 kb on - strand, within Pf6N2E2_860 at 1008.499 kb on + strand, within Pf6N2E2_860 at 1008.499 kb on + strand, within Pf6N2E2_860 at 1008.500 kb on - strand, within Pf6N2E2_860 at 1008.535 kb on + strand, within Pf6N2E2_860 at 1008.567 kb on - strand, within Pf6N2E2_860 at 1008.567 kb on - strand at 1008.826 kb on + strand, within Pf6N2E2_860 at 1008.826 kb on + strand, within Pf6N2E2_860 at 1008.826 kb on + strand, within Pf6N2E2_860 at 1008.826 kb on + strand, within Pf6N2E2_860 at 1008.827 kb on - strand, within Pf6N2E2_860 at 1008.841 kb on - strand, within Pf6N2E2_860 at 1008.841 kb on - strand, within Pf6N2E2_860 at 1008.841 kb on - strand, within Pf6N2E2_860 at 1008.841 kb on - strand, within Pf6N2E2_860 at 1008.844 kb on + strand, within Pf6N2E2_860 at 1008.940 kb on - strand, within Pf6N2E2_860 at 1008.940 kb on - strand, within Pf6N2E2_860 at 1008.940 kb on - strand, within Pf6N2E2_860 at 1008.998 kb on + strand, within Pf6N2E2_860 at 1008.999 kb on - strand, within Pf6N2E2_860 at 1009.078 kb on + strand at 1009.079 kb on - strand at 1009.266 kb on - strand at 1009.292 kb on + strand at 1009.292 kb on + strand at 1009.293 kb on - strand at 1009.293 kb on - strand at 1009.293 kb on - strand at 1009.293 kb on - strand at 1009.315 kb on + strand at 1009.339 kb on + strand at 1009.432 kb on + strand at 1009.485 kb on + strand, within Pf6N2E2_861 at 1009.699 kb on + strand, within Pf6N2E2_861 at 1009.699 kb on + strand, within Pf6N2E2_861 at 1009.710 kb on + strand, within Pf6N2E2_861 at 1009.710 kb on + strand, within Pf6N2E2_861 at 1009.907 kb on - strand, within Pf6N2E2_861 at 1009.930 kb on + strand, within Pf6N2E2_861 at 1009.931 kb on - strand, within Pf6N2E2_861 at 1009.955 kb on + strand, within Pf6N2E2_861 at 1009.956 kb on - strand, within Pf6N2E2_861 at 1010.002 kb on + strand, within Pf6N2E2_861 at 1010.083 kb on + strand, within Pf6N2E2_861 at 1010.084 kb on - strand, within Pf6N2E2_861 at 1010.086 kb on + strand, within Pf6N2E2_861
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M remove 1,006,766 - Pf6N2E2_859 0.46 +1.0 1,006,934 + Pf6N2E2_859 0.57 -0.6 1,006,962 + Pf6N2E2_859 0.59 -0.5 1,006,963 - Pf6N2E2_859 0.59 -0.6 1,007,047 + Pf6N2E2_859 0.64 +0.2 1,007,140 + Pf6N2E2_859 0.70 -1.1 1,007,141 - Pf6N2E2_859 0.70 +1.2 1,007,141 - Pf6N2E2_859 0.70 +2.0 1,007,141 - Pf6N2E2_859 0.70 -0.2 1,007,299 + Pf6N2E2_859 0.80 -0.5 1,007,300 - Pf6N2E2_859 0.80 -0.7 1,007,300 - Pf6N2E2_859 0.80 -0.5 1,007,384 + Pf6N2E2_859 0.85 +1.1 1,007,384 + Pf6N2E2_859 0.85 +0.9 1,007,384 + Pf6N2E2_859 0.85 -1.1 1,007,385 - Pf6N2E2_859 0.85 -0.5 1,007,385 - Pf6N2E2_859 0.85 -0.5 1,007,514 + +0.9 1,007,515 - -1.0 1,007,519 + -0.9 1,007,519 + +0.7 1,007,519 + +0.5 1,007,647 + +0.9 1,007,647 + +0.9 1,007,647 + +1.0 1,007,647 + +2.1 1,007,647 + +2.0 1,007,647 + -2.3 1,007,647 + -0.7 1,007,647 + +0.7 1,007,647 + -1.6 1,007,648 - +3.1 1,007,648 - -1.0 1,007,648 - +1.1 1,007,648 - +1.1 1,007,648 - -3.5 1,007,878 + Pf6N2E2_860 0.13 -1.3 1,007,919 + Pf6N2E2_860 0.16 -0.6 1,007,920 - Pf6N2E2_860 0.16 +1.5 1,007,997 + Pf6N2E2_860 0.21 -1.6 1,007,998 - Pf6N2E2_860 0.21 +0.9 1,008,055 - Pf6N2E2_860 0.24 +0.5 1,008,055 - Pf6N2E2_860 0.24 -1.5 1,008,155 - Pf6N2E2_860 0.31 -1.9 1,008,155 - Pf6N2E2_860 0.31 -3.3 1,008,176 - Pf6N2E2_860 0.32 +0.6 1,008,186 + Pf6N2E2_860 0.33 +0.2 1,008,187 - Pf6N2E2_860 0.33 +0.4 1,008,274 - Pf6N2E2_860 0.39 +0.1 1,008,274 - Pf6N2E2_860 0.39 -0.2 1,008,359 - Pf6N2E2_860 0.44 +2.4 1,008,370 - Pf6N2E2_860 0.45 +1.0 1,008,499 + Pf6N2E2_860 0.53 -0.2 1,008,499 + Pf6N2E2_860 0.53 +0.4 1,008,500 - Pf6N2E2_860 0.53 +1.8 1,008,535 + Pf6N2E2_860 0.55 -2.9 1,008,567 - Pf6N2E2_860 0.57 +1.5 1,008,567 - +0.5 1,008,826 + Pf6N2E2_860 0.74 +0.9 1,008,826 + Pf6N2E2_860 0.74 -2.1 1,008,826 + Pf6N2E2_860 0.74 -1.6 1,008,826 + Pf6N2E2_860 0.74 -0.1 1,008,827 - Pf6N2E2_860 0.74 +1.6 1,008,841 - Pf6N2E2_860 0.75 +0.4 1,008,841 - Pf6N2E2_860 0.75 -0.8 1,008,841 - Pf6N2E2_860 0.75 +0.3 1,008,841 - Pf6N2E2_860 0.75 -2.4 1,008,844 + Pf6N2E2_860 0.75 +2.5 1,008,940 - Pf6N2E2_860 0.82 +1.3 1,008,940 - Pf6N2E2_860 0.82 +1.0 1,008,940 - Pf6N2E2_860 0.82 +0.3 1,008,998 + Pf6N2E2_860 0.85 +1.1 1,008,999 - Pf6N2E2_860 0.85 -1.3 1,009,078 + +0.4 1,009,079 - +1.3 1,009,266 - -0.5 1,009,292 + +0.5 1,009,292 + +1.0 1,009,293 - -1.3 1,009,293 - +3.8 1,009,293 - -1.6 1,009,293 - -1.0 1,009,315 + -0.6 1,009,339 + -1.6 1,009,432 + +1.4 1,009,485 + Pf6N2E2_861 0.13 +1.8 1,009,699 + Pf6N2E2_861 0.34 +3.8 1,009,699 + Pf6N2E2_861 0.34 +0.2 1,009,710 + Pf6N2E2_861 0.35 +1.2 1,009,710 + Pf6N2E2_861 0.35 -0.2 1,009,907 - Pf6N2E2_861 0.55 -1.9 1,009,930 + Pf6N2E2_861 0.57 +1.4 1,009,931 - Pf6N2E2_861 0.57 -0.9 1,009,955 + Pf6N2E2_861 0.59 +0.7 1,009,956 - Pf6N2E2_861 0.59 +0.4 1,010,002 + Pf6N2E2_861 0.64 +0.0 1,010,083 + Pf6N2E2_861 0.72 -0.1 1,010,084 - Pf6N2E2_861 0.72 -0.9 1,010,086 + Pf6N2E2_861 0.72 +0.5
Or see this region's nucleotide sequence