Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6035

Experiment: Zinc chloride 0.0000015625 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_6033 and Pf6N2E2_6034 overlap by 4 nucleotidesPf6N2E2_6034 and Pf6N2E2_6035 are separated by 15 nucleotidesPf6N2E2_6035 and Pf6N2E2_6036 are separated by 97 nucleotides Pf6N2E2_6033 - Sterol desaturase, at 6,849,429 to 6,850,526 _6033 Pf6N2E2_6034 - FIG00965471: hypothetical protein, at 6,850,523 to 6,851,338 _6034 Pf6N2E2_6035 - alpha/beta hydrolase fold, at 6,851,354 to 6,852,034 _6035 Pf6N2E2_6036 - hypothetical protein, at 6,852,132 to 6,852,755 _6036 Position (kb) 6851 6852 6853Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6850.365 kb on + strand, within Pf6N2E2_6033at 6850.365 kb on + strand, within Pf6N2E2_6033at 6850.365 kb on + strand, within Pf6N2E2_6033at 6850.365 kb on + strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.367 kb on + strand, within Pf6N2E2_6033at 6850.408 kb on - strand, within Pf6N2E2_6033at 6850.426 kb on - strandat 6850.718 kb on + strand, within Pf6N2E2_6034at 6850.718 kb on + strand, within Pf6N2E2_6034at 6850.843 kb on + strand, within Pf6N2E2_6034at 6850.897 kb on + strand, within Pf6N2E2_6034at 6850.897 kb on + strand, within Pf6N2E2_6034at 6850.914 kb on - strand, within Pf6N2E2_6034at 6850.914 kb on - strand, within Pf6N2E2_6034at 6850.914 kb on - strand, within Pf6N2E2_6034at 6851.209 kb on - strand, within Pf6N2E2_6034at 6851.234 kb on + strand, within Pf6N2E2_6034at 6851.235 kb on - strand, within Pf6N2E2_6034at 6851.235 kb on - strand, within Pf6N2E2_6034at 6851.305 kb on + strandat 6851.912 kb on + strand, within Pf6N2E2_6035at 6851.913 kb on - strand, within Pf6N2E2_6035at 6851.913 kb on - strand, within Pf6N2E2_6035at 6851.980 kb on + strandat 6852.115 kb on - strandat 6852.271 kb on - strand, within Pf6N2E2_6036at 6852.279 kb on + strand, within Pf6N2E2_6036at 6852.279 kb on + strand, within Pf6N2E2_6036at 6852.280 kb on - strand, within Pf6N2E2_6036at 6852.280 kb on - strand, within Pf6N2E2_6036at 6852.319 kb on + strand, within Pf6N2E2_6036at 6852.320 kb on - strand, within Pf6N2E2_6036at 6852.336 kb on + strand, within Pf6N2E2_6036at 6852.336 kb on + strand, within Pf6N2E2_6036at 6852.360 kb on + strand, within Pf6N2E2_6036at 6852.361 kb on - strand, within Pf6N2E2_6036at 6852.455 kb on + strand, within Pf6N2E2_6036at 6852.455 kb on + strand, within Pf6N2E2_6036at 6852.514 kb on + strand, within Pf6N2E2_6036at 6852.552 kb on + strand, within Pf6N2E2_6036at 6852.552 kb on + strand, within Pf6N2E2_6036at 6852.553 kb on - strandat 6852.553 kb on - strand, within Pf6N2E2_6036at 6852.626 kb on + strand, within Pf6N2E2_6036at 6852.626 kb on + strand, within Pf6N2E2_6036at 6852.626 kb on + strand, within Pf6N2E2_6036at 6852.784 kb on + strandat 6852.792 kb on + strandat 6852.793 kb on - strandat 6852.793 kb on - strandat 6852.794 kb on + strandat 6852.794 kb on + strandat 6852.794 kb on + strandat 6852.794 kb on + strandat 6852.799 kb on + strandat 6852.799 kb on + strandat 6852.929 kb on + strandat 6852.929 kb on + strandat 6852.929 kb on + strandat 6852.930 kb on - strandat 6852.972 kb on + strandat 6852.982 kb on + strandat 6852.983 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
remove
6,850,365 + Pf6N2E2_6033 0.85 -1.7
6,850,365 + Pf6N2E2_6033 0.85 -2.2
6,850,365 + Pf6N2E2_6033 0.85 -1.6
6,850,365 + Pf6N2E2_6033 0.85 -1.1
6,850,366 - Pf6N2E2_6033 0.85 +1.1
6,850,366 - Pf6N2E2_6033 0.85 +1.3
6,850,366 - Pf6N2E2_6033 0.85 -2.0
6,850,366 - Pf6N2E2_6033 0.85 -1.1
6,850,366 - Pf6N2E2_6033 0.85 +0.3
6,850,366 - Pf6N2E2_6033 0.85 -0.4
6,850,366 - Pf6N2E2_6033 0.85 +1.6
6,850,366 - Pf6N2E2_6033 0.85 +0.4
6,850,367 + Pf6N2E2_6033 0.85 -1.3
6,850,408 - Pf6N2E2_6033 0.89 -0.2
6,850,426 - +0.4
6,850,718 + Pf6N2E2_6034 0.24 +0.4
6,850,718 + Pf6N2E2_6034 0.24 +0.7
6,850,843 + Pf6N2E2_6034 0.39 -1.0
6,850,897 + Pf6N2E2_6034 0.46 -2.2
6,850,897 + Pf6N2E2_6034 0.46 -0.5
6,850,914 - Pf6N2E2_6034 0.48 -0.5
6,850,914 - Pf6N2E2_6034 0.48 -3.3
6,850,914 - Pf6N2E2_6034 0.48 +1.8
6,851,209 - Pf6N2E2_6034 0.84 -2.6
6,851,234 + Pf6N2E2_6034 0.87 -2.0
6,851,235 - Pf6N2E2_6034 0.87 -0.7
6,851,235 - Pf6N2E2_6034 0.87 +1.0
6,851,305 + -2.4
6,851,912 + Pf6N2E2_6035 0.82 -1.6
6,851,913 - Pf6N2E2_6035 0.82 -2.8
6,851,913 - Pf6N2E2_6035 0.82 +0.3
6,851,980 + -2.1
6,852,115 - +0.3
6,852,271 - Pf6N2E2_6036 0.22 +1.0
6,852,279 + Pf6N2E2_6036 0.24 -0.5
6,852,279 + Pf6N2E2_6036 0.24 -1.3
6,852,280 - Pf6N2E2_6036 0.24 -0.1
6,852,280 - Pf6N2E2_6036 0.24 +0.1
6,852,319 + Pf6N2E2_6036 0.30 -0.5
6,852,320 - Pf6N2E2_6036 0.30 +1.7
6,852,336 + Pf6N2E2_6036 0.33 -2.5
6,852,336 + Pf6N2E2_6036 0.33 -2.3
6,852,360 + Pf6N2E2_6036 0.37 -2.4
6,852,361 - Pf6N2E2_6036 0.37 +0.0
6,852,455 + Pf6N2E2_6036 0.52 -0.4
6,852,455 + Pf6N2E2_6036 0.52 -1.8
6,852,514 + Pf6N2E2_6036 0.61 -0.4
6,852,552 + Pf6N2E2_6036 0.67 -2.2
6,852,552 + Pf6N2E2_6036 0.67 -2.6
6,852,553 - +1.6
6,852,553 - Pf6N2E2_6036 0.67 +0.2
6,852,626 + Pf6N2E2_6036 0.79 -3.1
6,852,626 + Pf6N2E2_6036 0.79 -2.2
6,852,626 + Pf6N2E2_6036 0.79 -2.7
6,852,784 + -0.6
6,852,792 + -1.3
6,852,793 - +0.0
6,852,793 - +1.8
6,852,794 + +0.6
6,852,794 + -2.3
6,852,794 + -2.0
6,852,794 + -2.2
6,852,799 + -1.1
6,852,799 + -2.1
6,852,929 + -1.9
6,852,929 + -1.6
6,852,929 + -0.4
6,852,930 - -0.4
6,852,972 + -2.4
6,852,982 + -0.2
6,852,983 - -0.4

Or see this region's nucleotide sequence