Experiment: Zinc chloride 0.0000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6031 and Pf6N2E2_6032 are separated by 161 nucleotides Pf6N2E2_6032 and Pf6N2E2_6033 are separated by 88 nucleotides Pf6N2E2_6033 and Pf6N2E2_6034 overlap by 4 nucleotides Pf6N2E2_6034 and Pf6N2E2_6035 are separated by 15 nucleotides
Pf6N2E2_6031 - hypothetical protein, at 6,848,181 to 6,848,705
_6031
Pf6N2E2_6032 - acetyltransferase, GNAT family, at 6,848,867 to 6,849,340
_6032
Pf6N2E2_6033 - Sterol desaturase, at 6,849,429 to 6,850,526
_6033
Pf6N2E2_6034 - FIG00965471: hypothetical protein, at 6,850,523 to 6,851,338
_6034
Pf6N2E2_6035 - alpha/beta hydrolase fold, at 6,851,354 to 6,852,034
_6035
Position (kb)
6849
6850
6851 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6848.551 kb on + strand, within Pf6N2E2_6031 at 6848.551 kb on + strand, within Pf6N2E2_6031 at 6848.741 kb on + strand at 6848.741 kb on + strand at 6848.742 kb on - strand at 6848.742 kb on - strand at 6848.820 kb on + strand at 6848.820 kb on + strand at 6848.821 kb on - strand at 6848.821 kb on - strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.847 kb on + strand at 6848.847 kb on + strand at 6848.847 kb on + strand at 6848.893 kb on + strand at 6848.893 kb on + strand at 6848.926 kb on + strand, within Pf6N2E2_6032 at 6848.926 kb on + strand, within Pf6N2E2_6032 at 6848.926 kb on + strand, within Pf6N2E2_6032 at 6848.927 kb on - strand, within Pf6N2E2_6032 at 6848.927 kb on - strand, within Pf6N2E2_6032 at 6848.927 kb on - strand, within Pf6N2E2_6032 at 6849.037 kb on + strand, within Pf6N2E2_6032 at 6849.038 kb on - strand, within Pf6N2E2_6032 at 6849.038 kb on - strand, within Pf6N2E2_6032 at 6849.187 kb on - strand, within Pf6N2E2_6032 at 6849.278 kb on - strand, within Pf6N2E2_6032 at 6849.278 kb on - strand, within Pf6N2E2_6032 at 6849.283 kb on + strand, within Pf6N2E2_6032 at 6849.283 kb on + strand, within Pf6N2E2_6032 at 6849.313 kb on + strand at 6849.313 kb on + strand at 6849.313 kb on + strand at 6849.394 kb on + strand at 6849.450 kb on + strand at 6849.450 kb on + strand at 6849.451 kb on - strand at 6849.451 kb on - strand at 6849.451 kb on - strand at 6849.451 kb on - strand at 6849.552 kb on + strand, within Pf6N2E2_6033 at 6849.553 kb on - strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.678 kb on + strand, within Pf6N2E2_6033 at 6849.681 kb on + strand, within Pf6N2E2_6033 at 6849.681 kb on + strand, within Pf6N2E2_6033 at 6849.744 kb on + strand, within Pf6N2E2_6033 at 6849.744 kb on + strand, within Pf6N2E2_6033 at 6849.744 kb on + strand, within Pf6N2E2_6033 at 6849.744 kb on + strand, within Pf6N2E2_6033 at 6849.745 kb on - strand, within Pf6N2E2_6033 at 6849.745 kb on - strand, within Pf6N2E2_6033 at 6849.745 kb on - strand, within Pf6N2E2_6033 at 6849.766 kb on - strand, within Pf6N2E2_6033 at 6849.838 kb on - strand, within Pf6N2E2_6033 at 6849.877 kb on - strand, within Pf6N2E2_6033 at 6849.949 kb on + strand, within Pf6N2E2_6033 at 6850.047 kb on + strand, within Pf6N2E2_6033 at 6850.048 kb on - strand, within Pf6N2E2_6033 at 6850.048 kb on - strand, within Pf6N2E2_6033 at 6850.048 kb on - strand, within Pf6N2E2_6033 at 6850.095 kb on + strand, within Pf6N2E2_6033 at 6850.095 kb on + strand, within Pf6N2E2_6033 at 6850.096 kb on - strand, within Pf6N2E2_6033 at 6850.290 kb on + strand, within Pf6N2E2_6033 at 6850.290 kb on + strand, within Pf6N2E2_6033 at 6850.291 kb on - strand, within Pf6N2E2_6033 at 6850.291 kb on - strand, within Pf6N2E2_6033 at 6850.291 kb on - strand, within Pf6N2E2_6033 at 6850.365 kb on + strand, within Pf6N2E2_6033 at 6850.365 kb on + strand, within Pf6N2E2_6033 at 6850.365 kb on + strand, within Pf6N2E2_6033 at 6850.365 kb on + strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.366 kb on - strand, within Pf6N2E2_6033 at 6850.367 kb on + strand, within Pf6N2E2_6033 at 6850.408 kb on - strand, within Pf6N2E2_6033 at 6850.426 kb on - strand at 6850.718 kb on + strand, within Pf6N2E2_6034 at 6850.718 kb on + strand, within Pf6N2E2_6034 at 6850.843 kb on + strand, within Pf6N2E2_6034 at 6850.897 kb on + strand, within Pf6N2E2_6034 at 6850.897 kb on + strand, within Pf6N2E2_6034 at 6850.914 kb on - strand, within Pf6N2E2_6034 at 6850.914 kb on - strand, within Pf6N2E2_6034 at 6850.914 kb on - strand, within Pf6N2E2_6034 at 6851.209 kb on - strand, within Pf6N2E2_6034 at 6851.234 kb on + strand, within Pf6N2E2_6034 at 6851.235 kb on - strand, within Pf6N2E2_6034 at 6851.235 kb on - strand, within Pf6N2E2_6034 at 6851.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M remove 6,848,551 + Pf6N2E2_6031 0.70 -1.0 6,848,551 + Pf6N2E2_6031 0.70 +0.8 6,848,741 + +1.4 6,848,741 + -0.2 6,848,742 - +0.6 6,848,742 - -1.1 6,848,820 + +0.9 6,848,820 + +0.8 6,848,821 - +2.6 6,848,821 - -1.1 6,848,824 + -0.7 6,848,824 + +0.0 6,848,824 + -2.8 6,848,824 + +0.7 6,848,824 + +1.8 6,848,824 + +0.9 6,848,824 + -2.0 6,848,824 + +0.6 6,848,824 + -0.8 6,848,824 + -1.0 6,848,825 - +1.4 6,848,825 - +1.6 6,848,825 - +1.1 6,848,825 - +1.7 6,848,825 - -0.7 6,848,825 - +0.2 6,848,825 - -0.8 6,848,825 - +2.0 6,848,825 - +0.1 6,848,825 - -1.1 6,848,825 - +0.6 6,848,847 + -0.7 6,848,847 + -0.4 6,848,847 + +0.5 6,848,893 + -0.8 6,848,893 + +0.9 6,848,926 + Pf6N2E2_6032 0.12 -1.3 6,848,926 + Pf6N2E2_6032 0.12 -0.3 6,848,926 + Pf6N2E2_6032 0.12 -2.2 6,848,927 - Pf6N2E2_6032 0.13 -0.6 6,848,927 - Pf6N2E2_6032 0.13 +1.3 6,848,927 - Pf6N2E2_6032 0.13 -0.2 6,849,037 + Pf6N2E2_6032 0.36 +0.2 6,849,038 - Pf6N2E2_6032 0.36 +1.3 6,849,038 - Pf6N2E2_6032 0.36 +0.0 6,849,187 - Pf6N2E2_6032 0.68 +2.0 6,849,278 - Pf6N2E2_6032 0.87 +0.7 6,849,278 - Pf6N2E2_6032 0.87 +0.3 6,849,283 + Pf6N2E2_6032 0.88 +0.2 6,849,283 + Pf6N2E2_6032 0.88 -0.8 6,849,313 + +0.4 6,849,313 + +1.7 6,849,313 + +2.4 6,849,394 + +1.7 6,849,450 + -0.6 6,849,450 + +0.6 6,849,451 - -1.0 6,849,451 - -0.2 6,849,451 - +0.6 6,849,451 - +0.2 6,849,552 + Pf6N2E2_6033 0.11 -2.2 6,849,553 - Pf6N2E2_6033 0.11 +1.5 6,849,678 + Pf6N2E2_6033 0.23 +2.2 6,849,678 + Pf6N2E2_6033 0.23 -2.3 6,849,678 + Pf6N2E2_6033 0.23 -0.6 6,849,678 + Pf6N2E2_6033 0.23 -2.8 6,849,681 + Pf6N2E2_6033 0.23 -0.5 6,849,681 + Pf6N2E2_6033 0.23 -0.9 6,849,744 + Pf6N2E2_6033 0.29 -0.4 6,849,744 + Pf6N2E2_6033 0.29 -3.6 6,849,744 + Pf6N2E2_6033 0.29 -0.0 6,849,744 + Pf6N2E2_6033 0.29 -1.5 6,849,745 - Pf6N2E2_6033 0.29 -0.6 6,849,745 - Pf6N2E2_6033 0.29 -2.0 6,849,745 - Pf6N2E2_6033 0.29 +1.0 6,849,766 - Pf6N2E2_6033 0.31 +2.3 6,849,838 - Pf6N2E2_6033 0.37 -0.4 6,849,877 - Pf6N2E2_6033 0.41 +3.0 6,849,949 + Pf6N2E2_6033 0.47 -0.4 6,850,047 + Pf6N2E2_6033 0.56 -1.3 6,850,048 - Pf6N2E2_6033 0.56 +1.1 6,850,048 - Pf6N2E2_6033 0.56 -0.4 6,850,048 - Pf6N2E2_6033 0.56 +0.1 6,850,095 + Pf6N2E2_6033 0.61 +1.0 6,850,095 + Pf6N2E2_6033 0.61 +0.2 6,850,096 - Pf6N2E2_6033 0.61 +3.2 6,850,290 + Pf6N2E2_6033 0.78 -1.4 6,850,290 + Pf6N2E2_6033 0.78 -1.3 6,850,291 - Pf6N2E2_6033 0.79 +0.2 6,850,291 - Pf6N2E2_6033 0.79 -1.8 6,850,291 - Pf6N2E2_6033 0.79 -1.2 6,850,365 + Pf6N2E2_6033 0.85 -1.7 6,850,365 + Pf6N2E2_6033 0.85 -2.2 6,850,365 + Pf6N2E2_6033 0.85 -1.6 6,850,365 + Pf6N2E2_6033 0.85 -1.1 6,850,366 - Pf6N2E2_6033 0.85 +1.1 6,850,366 - Pf6N2E2_6033 0.85 +1.3 6,850,366 - Pf6N2E2_6033 0.85 -2.0 6,850,366 - Pf6N2E2_6033 0.85 -1.1 6,850,366 - Pf6N2E2_6033 0.85 +0.3 6,850,366 - Pf6N2E2_6033 0.85 -0.4 6,850,366 - Pf6N2E2_6033 0.85 +1.6 6,850,366 - Pf6N2E2_6033 0.85 +0.4 6,850,367 + Pf6N2E2_6033 0.85 -1.3 6,850,408 - Pf6N2E2_6033 0.89 -0.2 6,850,426 - +0.4 6,850,718 + Pf6N2E2_6034 0.24 +0.4 6,850,718 + Pf6N2E2_6034 0.24 +0.7 6,850,843 + Pf6N2E2_6034 0.39 -1.0 6,850,897 + Pf6N2E2_6034 0.46 -2.2 6,850,897 + Pf6N2E2_6034 0.46 -0.5 6,850,914 - Pf6N2E2_6034 0.48 -0.5 6,850,914 - Pf6N2E2_6034 0.48 -3.3 6,850,914 - Pf6N2E2_6034 0.48 +1.8 6,851,209 - Pf6N2E2_6034 0.84 -2.6 6,851,234 + Pf6N2E2_6034 0.87 -2.0 6,851,235 - Pf6N2E2_6034 0.87 -0.7 6,851,235 - Pf6N2E2_6034 0.87 +1.0 6,851,305 + -2.4
Or see this region's nucleotide sequence