Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5376

Experiment: Zinc chloride 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5375 and Pf6N2E2_5376 are separated by 37 nucleotidesPf6N2E2_5376 and Pf6N2E2_5377 are separated by 171 nucleotides Pf6N2E2_5375 - Oxidoreductase, short chain dehydrogenase/reductase family, at 6,176,480 to 6,177,304 _5375 Pf6N2E2_5376 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 6,177,342 to 6,177,806 _5376 Pf6N2E2_5377 - Mannose-6-phosphate isomerase (EC 5.3.1.8) / Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22), at 6,177,978 to 6,179,429 _5377 Position (kb) 6177 6178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6176.364 kb on + strandat 6176.364 kb on + strandat 6176.364 kb on + strandat 6176.365 kb on - strandat 6176.365 kb on - strandat 6176.365 kb on - strandat 6176.457 kb on + strandat 6176.457 kb on + strandat 6176.458 kb on - strandat 6176.481 kb on + strandat 6176.482 kb on - strandat 6176.877 kb on + strand, within Pf6N2E2_5375at 6177.192 kb on - strand, within Pf6N2E2_5375at 6177.192 kb on - strand, within Pf6N2E2_5375at 6177.529 kb on + strand, within Pf6N2E2_5376at 6177.530 kb on - strand, within Pf6N2E2_5376at 6177.530 kb on - strand, within Pf6N2E2_5376at 6177.627 kb on - strand, within Pf6N2E2_5376at 6177.628 kb on + strand, within Pf6N2E2_5376at 6177.628 kb on + strand, within Pf6N2E2_5376at 6177.628 kb on + strand, within Pf6N2E2_5376at 6177.628 kb on + strand, within Pf6N2E2_5376at 6177.628 kb on + strand, within Pf6N2E2_5376at 6177.628 kb on + strand, within Pf6N2E2_5376at 6177.628 kb on + strand, within Pf6N2E2_5376at 6177.628 kb on + strand, within Pf6N2E2_5376at 6177.628 kb on + strand, within Pf6N2E2_5376at 6177.629 kb on - strand, within Pf6N2E2_5376at 6177.629 kb on - strand, within Pf6N2E2_5376at 6177.629 kb on - strand, within Pf6N2E2_5376at 6177.629 kb on - strand, within Pf6N2E2_5376at 6177.629 kb on - strand, within Pf6N2E2_5376at 6177.629 kb on - strand, within Pf6N2E2_5376at 6177.629 kb on - strand, within Pf6N2E2_5376at 6177.629 kb on - strand, within Pf6N2E2_5376at 6177.629 kb on - strand, within Pf6N2E2_5376at 6177.633 kb on + strand, within Pf6N2E2_5376at 6177.956 kb on + strandat 6177.956 kb on + strandat 6177.956 kb on + strandat 6177.956 kb on + strandat 6177.957 kb on - strandat 6177.957 kb on - strandat 6177.957 kb on - strandat 6177.957 kb on - strandat 6177.957 kb on - strandat 6177.980 kb on - strandat 6178.033 kb on + strandat 6178.033 kb on + strandat 6178.033 kb on + strandat 6178.034 kb on - strandat 6178.034 kb on - strandat 6178.034 kb on - strandat 6178.072 kb on + strandat 6178.072 kb on + strandat 6178.073 kb on - strandat 6178.153 kb on + strand, within Pf6N2E2_5377at 6178.153 kb on + strand, within Pf6N2E2_5377at 6178.153 kb on + strand, within Pf6N2E2_5377at 6178.153 kb on + strand, within Pf6N2E2_5377at 6178.153 kb on + strand, within Pf6N2E2_5377at 6178.154 kb on - strand, within Pf6N2E2_5377at 6178.154 kb on - strand, within Pf6N2E2_5377at 6178.154 kb on - strand, within Pf6N2E2_5377at 6178.331 kb on - strand, within Pf6N2E2_5377at 6178.331 kb on - strand, within Pf6N2E2_5377at 6178.331 kb on - strand, within Pf6N2E2_5377at 6178.349 kb on - strand, within Pf6N2E2_5377at 6178.682 kb on - strand, within Pf6N2E2_5377at 6178.730 kb on + strand, within Pf6N2E2_5377at 6178.731 kb on - strand, within Pf6N2E2_5377at 6178.731 kb on - strand, within Pf6N2E2_5377at 6178.783 kb on + strand, within Pf6N2E2_5377at 6178.783 kb on + strand, within Pf6N2E2_5377at 6178.783 kb on + strand, within Pf6N2E2_5377at 6178.783 kb on + strand, within Pf6N2E2_5377at 6178.783 kb on + strand, within Pf6N2E2_5377at 6178.783 kb on + strand, within Pf6N2E2_5377at 6178.784 kb on - strand, within Pf6N2E2_5377at 6178.784 kb on - strand, within Pf6N2E2_5377at 6178.784 kb on - strand, within Pf6N2E2_5377at 6178.784 kb on - strand, within Pf6N2E2_5377at 6178.784 kb on - strand, within Pf6N2E2_5377at 6178.784 kb on - strand, within Pf6N2E2_5377at 6178.784 kb on - strand, within Pf6N2E2_5377at 6178.784 kb on - strand, within Pf6N2E2_5377

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
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6,176,364 + -1.2
6,176,364 + -0.9
6,176,364 + +1.3
6,176,365 - -1.2
6,176,365 - +0.1
6,176,365 - -2.3
6,176,457 + +1.9
6,176,457 + -0.2
6,176,458 - -0.3
6,176,481 + +0.2
6,176,482 - +1.2
6,176,877 + Pf6N2E2_5375 0.48 -2.9
6,177,192 - Pf6N2E2_5375 0.86 -1.8
6,177,192 - Pf6N2E2_5375 0.86 +0.7
6,177,529 + Pf6N2E2_5376 0.40 -0.6
6,177,530 - Pf6N2E2_5376 0.40 +1.2
6,177,530 - Pf6N2E2_5376 0.40 +1.7
6,177,627 - Pf6N2E2_5376 0.61 -1.1
6,177,628 + Pf6N2E2_5376 0.62 -1.7
6,177,628 + Pf6N2E2_5376 0.62 +3.1
6,177,628 + Pf6N2E2_5376 0.62 +1.3
6,177,628 + Pf6N2E2_5376 0.62 -1.6
6,177,628 + Pf6N2E2_5376 0.62 -0.4
6,177,628 + Pf6N2E2_5376 0.62 -0.6
6,177,628 + Pf6N2E2_5376 0.62 -0.5
6,177,628 + Pf6N2E2_5376 0.62 -1.2
6,177,628 + Pf6N2E2_5376 0.62 -0.4
6,177,629 - Pf6N2E2_5376 0.62 +0.9
6,177,629 - Pf6N2E2_5376 0.62 +0.0
6,177,629 - Pf6N2E2_5376 0.62 +2.7
6,177,629 - Pf6N2E2_5376 0.62 +1.4
6,177,629 - Pf6N2E2_5376 0.62 +0.4
6,177,629 - Pf6N2E2_5376 0.62 +2.6
6,177,629 - Pf6N2E2_5376 0.62 -3.0
6,177,629 - Pf6N2E2_5376 0.62 +0.8
6,177,629 - Pf6N2E2_5376 0.62 +1.4
6,177,633 + Pf6N2E2_5376 0.63 +0.5
6,177,956 + +0.9
6,177,956 + +0.9
6,177,956 + +2.0
6,177,956 + -0.3
6,177,957 - -0.1
6,177,957 - -0.2
6,177,957 - -2.9
6,177,957 - -0.2
6,177,957 - +0.2
6,177,980 - +0.0
6,178,033 + +0.1
6,178,033 + -0.2
6,178,033 + +2.3
6,178,034 - -0.4
6,178,034 - +2.1
6,178,034 - -2.4
6,178,072 + +0.9
6,178,072 + +1.6
6,178,073 - +1.5
6,178,153 + Pf6N2E2_5377 0.12 +0.6
6,178,153 + Pf6N2E2_5377 0.12 -0.1
6,178,153 + Pf6N2E2_5377 0.12 +0.3
6,178,153 + Pf6N2E2_5377 0.12 -2.7
6,178,153 + Pf6N2E2_5377 0.12 +0.6
6,178,154 - Pf6N2E2_5377 0.12 -0.4
6,178,154 - Pf6N2E2_5377 0.12 -0.5
6,178,154 - Pf6N2E2_5377 0.12 -1.7
6,178,331 - Pf6N2E2_5377 0.24 -2.6
6,178,331 - Pf6N2E2_5377 0.24 +1.4
6,178,331 - Pf6N2E2_5377 0.24 -0.8
6,178,349 - Pf6N2E2_5377 0.26 -2.6
6,178,682 - Pf6N2E2_5377 0.48 -0.9
6,178,730 + Pf6N2E2_5377 0.52 +0.4
6,178,731 - Pf6N2E2_5377 0.52 -2.0
6,178,731 - Pf6N2E2_5377 0.52 +1.2
6,178,783 + Pf6N2E2_5377 0.55 +0.0
6,178,783 + Pf6N2E2_5377 0.55 +0.7
6,178,783 + Pf6N2E2_5377 0.55 +1.5
6,178,783 + Pf6N2E2_5377 0.55 +1.8
6,178,783 + Pf6N2E2_5377 0.55 +1.1
6,178,783 + Pf6N2E2_5377 0.55 -0.6
6,178,784 - Pf6N2E2_5377 0.56 +0.9
6,178,784 - Pf6N2E2_5377 0.56 -0.5
6,178,784 - Pf6N2E2_5377 0.56 -1.3
6,178,784 - Pf6N2E2_5377 0.56 +0.2
6,178,784 - Pf6N2E2_5377 0.56 +1.6
6,178,784 - Pf6N2E2_5377 0.56 +0.6
6,178,784 - Pf6N2E2_5377 0.56 +1.3
6,178,784 - Pf6N2E2_5377 0.56 +2.7

Or see this region's nucleotide sequence