Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5259

Experiment: Zinc chloride 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5258 and Pf6N2E2_5259 are separated by 132 nucleotidesPf6N2E2_5259 and Pf6N2E2_5260 are separated by 0 nucleotides Pf6N2E2_5258 - Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25), at 6,052,093 to 6,053,991 _5258 Pf6N2E2_5259 - FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 6,054,124 to 6,055,032 _5259 Pf6N2E2_5260 - Phosphate acetyltransferase (EC 2.3.1.8), at 6,055,033 to 6,057,132 _5260 Position (kb) 6054 6055 6056Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6053.149 kb on + strand, within Pf6N2E2_5258at 6053.149 kb on + strand, within Pf6N2E2_5258at 6053.149 kb on + strand, within Pf6N2E2_5258at 6053.173 kb on + strand, within Pf6N2E2_5258at 6053.174 kb on - strand, within Pf6N2E2_5258at 6053.174 kb on - strand, within Pf6N2E2_5258at 6053.647 kb on - strand, within Pf6N2E2_5258at 6053.791 kb on + strand, within Pf6N2E2_5258at 6053.791 kb on + strand, within Pf6N2E2_5258at 6053.792 kb on - strand, within Pf6N2E2_5258at 6053.842 kb on + strandat 6053.842 kb on + strandat 6053.843 kb on - strandat 6053.843 kb on - strandat 6053.843 kb on - strandat 6053.843 kb on - strandat 6053.884 kb on + strandat 6053.885 kb on - strandat 6053.988 kb on - strandat 6053.989 kb on + strandat 6053.989 kb on + strandat 6053.989 kb on + strandat 6053.989 kb on + strandat 6053.989 kb on + strandat 6053.989 kb on + strandat 6053.989 kb on + strandat 6053.989 kb on + strandat 6053.989 kb on + strandat 6053.989 kb on + strandat 6053.989 kb on + strandat 6053.989 kb on + strandat 6053.990 kb on - strandat 6053.990 kb on - strandat 6053.990 kb on - strandat 6053.990 kb on - strandat 6053.990 kb on - strandat 6053.990 kb on - strandat 6054.006 kb on - strandat 6054.030 kb on + strandat 6054.030 kb on + strandat 6054.031 kb on - strandat 6054.031 kb on - strandat 6054.031 kb on - strandat 6054.114 kb on + strandat 6054.114 kb on + strandat 6054.132 kb on + strandat 6054.132 kb on + strandat 6054.132 kb on + strandat 6054.141 kb on - strandat 6054.236 kb on + strand, within Pf6N2E2_5259at 6054.237 kb on - strand, within Pf6N2E2_5259at 6054.237 kb on - strand, within Pf6N2E2_5259at 6054.590 kb on + strand, within Pf6N2E2_5259at 6054.590 kb on + strand, within Pf6N2E2_5259at 6054.590 kb on + strand, within Pf6N2E2_5259at 6054.590 kb on + strand, within Pf6N2E2_5259at 6054.602 kb on + strand, within Pf6N2E2_5259at 6054.602 kb on + strand, within Pf6N2E2_5259at 6054.716 kb on + strand, within Pf6N2E2_5259at 6054.716 kb on + strand, within Pf6N2E2_5259at 6054.717 kb on - strand, within Pf6N2E2_5259at 6054.717 kb on - strand, within Pf6N2E2_5259at 6054.717 kb on - strand, within Pf6N2E2_5259at 6054.768 kb on - strand, within Pf6N2E2_5259at 6055.034 kb on + strandat 6055.034 kb on + strandat 6055.034 kb on + strandat 6055.034 kb on + strandat 6055.034 kb on + strandat 6055.035 kb on - strandat 6055.035 kb on - strandat 6055.035 kb on - strandat 6055.035 kb on - strandat 6055.035 kb on - strandat 6055.085 kb on + strandat 6055.086 kb on - strandat 6055.086 kb on - strandat 6055.086 kb on - strandat 6055.086 kb on - strandat 6055.086 kb on - strandat 6055.415 kb on + strand, within Pf6N2E2_5260at 6055.415 kb on + strand, within Pf6N2E2_5260at 6055.415 kb on + strand, within Pf6N2E2_5260at 6055.416 kb on - strand, within Pf6N2E2_5260at 6055.416 kb on - strand, within Pf6N2E2_5260at 6055.532 kb on + strand, within Pf6N2E2_5260at 6055.784 kb on + strand, within Pf6N2E2_5260at 6055.785 kb on - strand, within Pf6N2E2_5260at 6055.968 kb on + strand, within Pf6N2E2_5260at 6055.969 kb on - strand, within Pf6N2E2_5260

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
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6,053,149 + Pf6N2E2_5258 0.56 +0.2
6,053,149 + Pf6N2E2_5258 0.56 -0.9
6,053,149 + Pf6N2E2_5258 0.56 +0.4
6,053,173 + Pf6N2E2_5258 0.57 -0.7
6,053,174 - Pf6N2E2_5258 0.57 +1.2
6,053,174 - Pf6N2E2_5258 0.57 -2.4
6,053,647 - Pf6N2E2_5258 0.82 +0.7
6,053,791 + Pf6N2E2_5258 0.89 -1.0
6,053,791 + Pf6N2E2_5258 0.89 +0.8
6,053,792 - Pf6N2E2_5258 0.89 +0.2
6,053,842 + +2.1
6,053,842 + -0.7
6,053,843 - -2.0
6,053,843 - +2.1
6,053,843 - -2.3
6,053,843 - -2.2
6,053,884 + -0.5
6,053,885 - -0.3
6,053,988 - +0.7
6,053,989 + -1.7
6,053,989 + +0.5
6,053,989 + +1.1
6,053,989 + -0.4
6,053,989 + -0.4
6,053,989 + +0.8
6,053,989 + +0.8
6,053,989 + +0.4
6,053,989 + +1.6
6,053,989 + +1.4
6,053,989 + -0.4
6,053,989 + +0.8
6,053,990 - +0.1
6,053,990 - +1.1
6,053,990 - +1.2
6,053,990 - +1.1
6,053,990 - +1.5
6,053,990 - +1.6
6,054,006 - -1.4
6,054,030 + -0.1
6,054,030 + -0.3
6,054,031 - -1.9
6,054,031 - -2.3
6,054,031 - +0.8
6,054,114 + +0.1
6,054,114 + -0.1
6,054,132 + +1.1
6,054,132 + +0.9
6,054,132 + -0.1
6,054,141 - +2.6
6,054,236 + Pf6N2E2_5259 0.12 -0.9
6,054,237 - Pf6N2E2_5259 0.12 -0.0
6,054,237 - Pf6N2E2_5259 0.12 -2.1
6,054,590 + Pf6N2E2_5259 0.51 -2.8
6,054,590 + Pf6N2E2_5259 0.51 -0.8
6,054,590 + Pf6N2E2_5259 0.51 -2.3
6,054,590 + Pf6N2E2_5259 0.51 -0.9
6,054,602 + Pf6N2E2_5259 0.53 -0.2
6,054,602 + Pf6N2E2_5259 0.53 -1.6
6,054,716 + Pf6N2E2_5259 0.65 +0.0
6,054,716 + Pf6N2E2_5259 0.65 -1.2
6,054,717 - Pf6N2E2_5259 0.65 -2.4
6,054,717 - Pf6N2E2_5259 0.65 -2.0
6,054,717 - Pf6N2E2_5259 0.65 -1.6
6,054,768 - Pf6N2E2_5259 0.71 -2.8
6,055,034 + -0.9
6,055,034 + -1.7
6,055,034 + +1.0
6,055,034 + -1.3
6,055,034 + +1.2
6,055,035 - -1.5
6,055,035 - -1.2
6,055,035 - -0.2
6,055,035 - -2.7
6,055,035 - +1.5
6,055,085 + -2.6
6,055,086 - +0.7
6,055,086 - +1.8
6,055,086 - +1.1
6,055,086 - +1.3
6,055,086 - +1.1
6,055,415 + Pf6N2E2_5260 0.18 -1.3
6,055,415 + Pf6N2E2_5260 0.18 -1.3
6,055,415 + Pf6N2E2_5260 0.18 +0.1
6,055,416 - Pf6N2E2_5260 0.18 -0.4
6,055,416 - Pf6N2E2_5260 0.18 -0.7
6,055,532 + Pf6N2E2_5260 0.24 -1.4
6,055,784 + Pf6N2E2_5260 0.36 +1.2
6,055,785 - Pf6N2E2_5260 0.36 -1.7
6,055,968 + Pf6N2E2_5260 0.45 -0.7
6,055,969 - Pf6N2E2_5260 0.45 -0.0

Or see this region's nucleotide sequence