Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5124

Experiment: Zinc chloride 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5123 and Pf6N2E2_5124 overlap by 11 nucleotidesPf6N2E2_5124 and Pf6N2E2_5125 are separated by 110 nucleotides Pf6N2E2_5123 - Two-component sensor PilS, at 5,906,777 to 5,908,366 _5123 Pf6N2E2_5124 - FIG00953647: hypothetical protein, at 5,908,356 to 5,908,589 _5124 Pf6N2E2_5125 - Mobile element protein, at 5,908,700 to 5,910,058 _5125 Position (kb) 5908 5909Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5907.365 kb on + strand, within Pf6N2E2_5123at 5907.365 kb on + strand, within Pf6N2E2_5123at 5907.365 kb on + strand, within Pf6N2E2_5123at 5907.366 kb on - strand, within Pf6N2E2_5123at 5907.366 kb on - strand, within Pf6N2E2_5123at 5907.497 kb on + strand, within Pf6N2E2_5123at 5907.519 kb on + strand, within Pf6N2E2_5123at 5907.519 kb on + strand, within Pf6N2E2_5123at 5907.520 kb on - strand, within Pf6N2E2_5123at 5907.642 kb on + strand, within Pf6N2E2_5123at 5907.642 kb on + strand, within Pf6N2E2_5123at 5907.642 kb on + strand, within Pf6N2E2_5123at 5907.643 kb on - strand, within Pf6N2E2_5123at 5907.674 kb on + strand, within Pf6N2E2_5123at 5907.674 kb on + strand, within Pf6N2E2_5123at 5907.674 kb on + strand, within Pf6N2E2_5123at 5907.675 kb on - strand, within Pf6N2E2_5123at 5907.675 kb on - strand, within Pf6N2E2_5123at 5907.909 kb on + strand, within Pf6N2E2_5123at 5907.909 kb on + strand, within Pf6N2E2_5123at 5908.018 kb on + strand, within Pf6N2E2_5123at 5908.191 kb on + strand, within Pf6N2E2_5123at 5908.192 kb on - strand, within Pf6N2E2_5123at 5908.192 kb on - strand, within Pf6N2E2_5123at 5908.405 kb on + strand, within Pf6N2E2_5124at 5908.405 kb on + strand, within Pf6N2E2_5124at 5908.405 kb on + strand, within Pf6N2E2_5124at 5908.405 kb on + strand, within Pf6N2E2_5124at 5908.406 kb on - strand, within Pf6N2E2_5124at 5908.406 kb on - strand, within Pf6N2E2_5124at 5908.449 kb on + strand, within Pf6N2E2_5124at 5908.449 kb on + strand, within Pf6N2E2_5124at 5908.449 kb on + strand, within Pf6N2E2_5124at 5908.450 kb on - strand, within Pf6N2E2_5124at 5908.578 kb on + strandat 5908.579 kb on - strandat 5908.579 kb on - strandat 5908.579 kb on - strandat 5908.579 kb on - strandat 5908.655 kb on + strandat 5908.668 kb on + strandat 5908.668 kb on + strandat 5908.668 kb on + strandat 5908.668 kb on + strandat 5908.668 kb on + strandat 5908.669 kb on - strandat 5908.692 kb on - strandat 5908.705 kb on + strandat 5908.705 kb on + strandat 5908.706 kb on - strandat 5908.706 kb on - strandat 5908.723 kb on + strandat 5908.724 kb on - strandat 5908.803 kb on + strandat 5908.803 kb on + strandat 5908.803 kb on + strandat 5908.804 kb on - strandat 5908.804 kb on - strandat 5908.804 kb on - strandat 5908.804 kb on - strandat 5908.804 kb on - strandat 5908.836 kb on + strand, within Pf6N2E2_5125at 5908.836 kb on + strand, within Pf6N2E2_5125at 5908.836 kb on + strand, within Pf6N2E2_5125at 5908.836 kb on + strand, within Pf6N2E2_5125at 5908.837 kb on - strand, within Pf6N2E2_5125at 5908.837 kb on - strand, within Pf6N2E2_5125at 5908.880 kb on - strand, within Pf6N2E2_5125at 5909.044 kb on + strand, within Pf6N2E2_5125at 5909.044 kb on + strand, within Pf6N2E2_5125at 5909.044 kb on + strand, within Pf6N2E2_5125at 5909.045 kb on - strand, within Pf6N2E2_5125at 5909.045 kb on - strand, within Pf6N2E2_5125at 5909.045 kb on - strand, within Pf6N2E2_5125at 5909.045 kb on - strand, within Pf6N2E2_5125at 5909.045 kb on - strand, within Pf6N2E2_5125at 5909.047 kb on - strand, within Pf6N2E2_5125at 5909.047 kb on - strand, within Pf6N2E2_5125at 5909.113 kb on - strand, within Pf6N2E2_5125at 5909.113 kb on - strand, within Pf6N2E2_5125at 5909.113 kb on - strand, within Pf6N2E2_5125at 5909.313 kb on + strand, within Pf6N2E2_5125at 5909.387 kb on + strand, within Pf6N2E2_5125at 5909.586 kb on + strand, within Pf6N2E2_5125

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
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5,907,365 + Pf6N2E2_5123 0.37 -1.2
5,907,365 + Pf6N2E2_5123 0.37 +0.8
5,907,365 + Pf6N2E2_5123 0.37 +1.8
5,907,366 - Pf6N2E2_5123 0.37 -0.9
5,907,366 - Pf6N2E2_5123 0.37 +0.8
5,907,497 + Pf6N2E2_5123 0.45 -0.7
5,907,519 + Pf6N2E2_5123 0.47 -1.7
5,907,519 + Pf6N2E2_5123 0.47 +1.7
5,907,520 - Pf6N2E2_5123 0.47 +2.4
5,907,642 + Pf6N2E2_5123 0.54 +0.2
5,907,642 + Pf6N2E2_5123 0.54 -2.1
5,907,642 + Pf6N2E2_5123 0.54 +2.2
5,907,643 - Pf6N2E2_5123 0.54 +0.0
5,907,674 + Pf6N2E2_5123 0.56 -0.3
5,907,674 + Pf6N2E2_5123 0.56 +0.5
5,907,674 + Pf6N2E2_5123 0.56 +0.6
5,907,675 - Pf6N2E2_5123 0.56 -0.4
5,907,675 - Pf6N2E2_5123 0.56 +1.8
5,907,909 + Pf6N2E2_5123 0.71 +0.9
5,907,909 + Pf6N2E2_5123 0.71 +0.8
5,908,018 + Pf6N2E2_5123 0.78 +1.4
5,908,191 + Pf6N2E2_5123 0.89 -0.3
5,908,192 - Pf6N2E2_5123 0.89 -0.5
5,908,192 - Pf6N2E2_5123 0.89 -2.2
5,908,405 + Pf6N2E2_5124 0.21 +0.5
5,908,405 + Pf6N2E2_5124 0.21 +0.4
5,908,405 + Pf6N2E2_5124 0.21 -0.0
5,908,405 + Pf6N2E2_5124 0.21 +0.7
5,908,406 - Pf6N2E2_5124 0.21 -0.1
5,908,406 - Pf6N2E2_5124 0.21 +1.5
5,908,449 + Pf6N2E2_5124 0.40 +2.7
5,908,449 + Pf6N2E2_5124 0.40 +1.4
5,908,449 + Pf6N2E2_5124 0.40 -1.7
5,908,450 - Pf6N2E2_5124 0.40 +0.1
5,908,578 + +1.1
5,908,579 - +2.0
5,908,579 - +0.3
5,908,579 - -0.0
5,908,579 - +1.3
5,908,655 + -1.0
5,908,668 + -0.5
5,908,668 + +0.6
5,908,668 + +2.2
5,908,668 + +1.5
5,908,668 + -1.2
5,908,669 - -0.1
5,908,692 - +0.4
5,908,705 + +1.1
5,908,705 + -0.3
5,908,706 - +0.8
5,908,706 - -0.2
5,908,723 + -2.7
5,908,724 - +1.7
5,908,803 + -0.9
5,908,803 + +1.0
5,908,803 + +0.8
5,908,804 - -0.4
5,908,804 - +2.2
5,908,804 - +2.6
5,908,804 - -0.3
5,908,804 - -0.5
5,908,836 + Pf6N2E2_5125 0.10 +1.3
5,908,836 + Pf6N2E2_5125 0.10 -0.7
5,908,836 + Pf6N2E2_5125 0.10 +0.1
5,908,836 + Pf6N2E2_5125 0.10 +1.3
5,908,837 - Pf6N2E2_5125 0.10 +0.0
5,908,837 - Pf6N2E2_5125 0.10 +0.1
5,908,880 - Pf6N2E2_5125 0.13 +0.4
5,909,044 + Pf6N2E2_5125 0.25 +1.4
5,909,044 + Pf6N2E2_5125 0.25 -1.4
5,909,044 + Pf6N2E2_5125 0.25 -0.3
5,909,045 - Pf6N2E2_5125 0.25 -1.5
5,909,045 - Pf6N2E2_5125 0.25 -2.0
5,909,045 - Pf6N2E2_5125 0.25 +0.6
5,909,045 - Pf6N2E2_5125 0.25 +0.4
5,909,045 - Pf6N2E2_5125 0.25 +0.7
5,909,047 - Pf6N2E2_5125 0.26 -0.9
5,909,047 - Pf6N2E2_5125 0.26 +1.2
5,909,113 - Pf6N2E2_5125 0.30 -2.9
5,909,113 - Pf6N2E2_5125 0.30 -0.6
5,909,113 - Pf6N2E2_5125 0.30 +1.9
5,909,313 + Pf6N2E2_5125 0.45 +0.6
5,909,387 + Pf6N2E2_5125 0.51 -1.4
5,909,586 + Pf6N2E2_5125 0.65 +0.4

Or see this region's nucleotide sequence