Experiment: Zinc chloride 0.0000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4888 and Pf6N2E2_4889 are separated by 179 nucleotides Pf6N2E2_4889 and Pf6N2E2_4890 are separated by 9 nucleotides Pf6N2E2_4890 and Pf6N2E2_4891 are separated by 128 nucleotides
Pf6N2E2_4888 - Excinuclease ABC subunit A, at 5,636,526 to 5,639,360
_4888
Pf6N2E2_4889 - Putative transport protein, at 5,639,540 to 5,640,937
_4889
Pf6N2E2_4890 - Single-stranded DNA-binding protein, at 5,640,947 to 5,641,462
_4890
Pf6N2E2_4891 - hypothetical protein, at 5,641,591 to 5,642,064
_4891
Position (kb) 5639
5640
5641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5639.027 kb on - strand, within Pf6N2E2_4888 at 5639.027 kb on - strand, within Pf6N2E2_4888 at 5639.027 kb on - strand, within Pf6N2E2_4888 at 5639.027 kb on - strand, within Pf6N2E2_4888 at 5639.047 kb on + strand, within Pf6N2E2_4888 at 5639.047 kb on + strand, within Pf6N2E2_4888 at 5639.047 kb on + strand, within Pf6N2E2_4888 at 5639.048 kb on - strand, within Pf6N2E2_4888 at 5639.048 kb on - strand, within Pf6N2E2_4888 at 5639.048 kb on - strand, within Pf6N2E2_4888 at 5639.048 kb on - strand, within Pf6N2E2_4888 at 5639.048 kb on - strand, within Pf6N2E2_4888 at 5639.203 kb on + strand at 5639.204 kb on - strand at 5639.204 kb on - strand at 5639.225 kb on - strand at 5639.225 kb on - strand at 5639.391 kb on + strand at 5639.391 kb on + strand at 5639.392 kb on - strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.397 kb on + strand at 5639.398 kb on - strand at 5639.398 kb on - strand at 5639.398 kb on - strand at 5639.410 kb on - strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.450 kb on + strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.451 kb on - strand at 5639.481 kb on + strand at 5639.481 kb on + strand at 5639.481 kb on + strand at 5639.482 kb on - strand at 5639.482 kb on - strand at 5639.483 kb on + strand at 5639.483 kb on + strand at 5639.483 kb on + strand at 5639.483 kb on + strand at 5639.483 kb on + strand at 5639.484 kb on - strand at 5639.484 kb on - strand at 5639.484 kb on - strand at 5639.484 kb on - strand at 5639.484 kb on - strand at 5639.484 kb on - strand at 5639.507 kb on + strand at 5639.507 kb on + strand at 5639.620 kb on + strand at 5639.620 kb on + strand at 5639.717 kb on + strand, within Pf6N2E2_4889 at 5639.788 kb on + strand, within Pf6N2E2_4889 at 5639.793 kb on - strand, within Pf6N2E2_4889 at 5639.793 kb on - strand, within Pf6N2E2_4889 at 5639.793 kb on - strand, within Pf6N2E2_4889 at 5639.873 kb on - strand, within Pf6N2E2_4889 at 5639.873 kb on - strand, within Pf6N2E2_4889 at 5639.873 kb on - strand, within Pf6N2E2_4889 at 5640.309 kb on - strand, within Pf6N2E2_4889 at 5640.359 kb on + strand, within Pf6N2E2_4889 at 5640.359 kb on + strand, within Pf6N2E2_4889 at 5640.359 kb on + strand, within Pf6N2E2_4889 at 5640.429 kb on + strand, within Pf6N2E2_4889 at 5640.430 kb on - strand, within Pf6N2E2_4889 at 5640.578 kb on + strand, within Pf6N2E2_4889 at 5640.578 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.728 kb on + strand, within Pf6N2E2_4889 at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.851 kb on + strand at 5640.853 kb on + strand at 5640.853 kb on + strand at 5640.853 kb on + strand at 5640.853 kb on + strand at 5640.922 kb on + strand at 5640.935 kb on + strand at 5640.935 kb on + strand at 5641.477 kb on + strand at 5641.478 kb on - strand at 5641.488 kb on + strand at 5641.488 kb on + strand at 5641.488 kb on + strand at 5641.488 kb on + strand at 5641.489 kb on - strand at 5641.533 kb on + strand at 5641.534 kb on - strand at 5641.534 kb on - strand at 5641.609 kb on + strand at 5641.609 kb on + strand at 5641.610 kb on - strand at 5641.610 kb on - strand at 5641.610 kb on - strand at 5641.610 kb on - strand at 5641.679 kb on - strand, within Pf6N2E2_4891 at 5641.679 kb on - strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.765 kb on + strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.766 kb on - strand, within Pf6N2E2_4891 at 5641.769 kb on + strand, within Pf6N2E2_4891 at 5641.769 kb on + strand, within Pf6N2E2_4891 at 5641.769 kb on + strand, within Pf6N2E2_4891 at 5641.770 kb on - strand, within Pf6N2E2_4891 at 5641.770 kb on - strand, within Pf6N2E2_4891 at 5641.890 kb on + strand, within Pf6N2E2_4891 at 5641.891 kb on - strand, within Pf6N2E2_4891
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M remove 5,639,027 - Pf6N2E2_4888 0.88 -1.5 5,639,027 - Pf6N2E2_4888 0.88 -2.5 5,639,027 - Pf6N2E2_4888 0.88 -0.4 5,639,027 - Pf6N2E2_4888 0.88 -1.8 5,639,047 + Pf6N2E2_4888 0.89 -1.5 5,639,047 + Pf6N2E2_4888 0.89 +0.7 5,639,047 + Pf6N2E2_4888 0.89 -1.3 5,639,048 - Pf6N2E2_4888 0.89 +0.2 5,639,048 - Pf6N2E2_4888 0.89 +1.5 5,639,048 - Pf6N2E2_4888 0.89 -1.9 5,639,048 - Pf6N2E2_4888 0.89 -1.5 5,639,048 - Pf6N2E2_4888 0.89 +1.5 5,639,203 + -1.5 5,639,204 - +0.1 5,639,204 - +0.1 5,639,225 - -1.7 5,639,225 - +0.3 5,639,391 + +0.7 5,639,391 + -0.5 5,639,392 - -0.6 5,639,397 + -1.8 5,639,397 + -0.0 5,639,397 + -2.7 5,639,397 + -0.6 5,639,397 + +0.1 5,639,397 + -0.1 5,639,397 + -0.5 5,639,397 + -2.9 5,639,397 + -2.1 5,639,398 - -0.0 5,639,398 - -2.5 5,639,398 - +2.2 5,639,410 - +1.9 5,639,450 + -2.2 5,639,450 + -2.4 5,639,450 + -0.7 5,639,450 + -1.6 5,639,450 + -0.9 5,639,450 + -0.9 5,639,450 + -0.1 5,639,450 + -1.3 5,639,450 + -2.2 5,639,450 + +0.7 5,639,450 + +0.5 5,639,451 - -1.1 5,639,451 - -2.6 5,639,451 - +0.8 5,639,451 - +1.6 5,639,451 - +1.6 5,639,451 - -1.5 5,639,451 - -0.7 5,639,451 - +1.0 5,639,451 - +2.7 5,639,451 - +0.2 5,639,481 + -1.7 5,639,481 + -0.0 5,639,481 + -0.5 5,639,482 - -0.8 5,639,482 - +0.6 5,639,483 + -0.9 5,639,483 + -0.7 5,639,483 + -0.1 5,639,483 + -2.0 5,639,483 + -2.3 5,639,484 - -1.6 5,639,484 - -1.1 5,639,484 - +0.3 5,639,484 - +0.9 5,639,484 - -1.7 5,639,484 - -1.8 5,639,507 + +1.0 5,639,507 + -0.2 5,639,620 + -1.5 5,639,620 + -0.2 5,639,717 + Pf6N2E2_4889 0.13 -2.1 5,639,788 + Pf6N2E2_4889 0.18 -2.4 5,639,793 - Pf6N2E2_4889 0.18 -1.7 5,639,793 - Pf6N2E2_4889 0.18 -0.1 5,639,793 - Pf6N2E2_4889 0.18 -2.3 5,639,873 - Pf6N2E2_4889 0.24 -0.8 5,639,873 - Pf6N2E2_4889 0.24 -1.4 5,639,873 - Pf6N2E2_4889 0.24 -1.6 5,640,309 - Pf6N2E2_4889 0.55 -0.8 5,640,359 + Pf6N2E2_4889 0.59 -2.0 5,640,359 + Pf6N2E2_4889 0.59 +0.5 5,640,359 + Pf6N2E2_4889 0.59 -1.3 5,640,429 + Pf6N2E2_4889 0.64 -0.2 5,640,430 - Pf6N2E2_4889 0.64 -1.0 5,640,578 + Pf6N2E2_4889 0.74 -0.6 5,640,578 + Pf6N2E2_4889 0.74 -0.5 5,640,728 + Pf6N2E2_4889 0.85 -2.2 5,640,728 + Pf6N2E2_4889 0.85 -0.5 5,640,728 + Pf6N2E2_4889 0.85 +1.3 5,640,728 + Pf6N2E2_4889 0.85 -2.8 5,640,728 + Pf6N2E2_4889 0.85 +0.4 5,640,728 + Pf6N2E2_4889 0.85 +0.1 5,640,851 + -0.4 5,640,851 + -0.1 5,640,851 + -1.8 5,640,851 + +0.5 5,640,851 + -1.4 5,640,851 + -2.5 5,640,851 + -1.6 5,640,851 + -1.0 5,640,853 + -0.4 5,640,853 + -0.2 5,640,853 + -0.0 5,640,853 + -0.7 5,640,922 + +1.1 5,640,935 + +0.3 5,640,935 + -1.5 5,641,477 + +1.2 5,641,478 - +1.6 5,641,488 + +0.1 5,641,488 + +3.5 5,641,488 + +0.1 5,641,488 + -0.4 5,641,489 - -0.0 5,641,533 + -0.0 5,641,534 - +0.9 5,641,534 - -2.7 5,641,609 + +0.2 5,641,609 + -0.2 5,641,610 - +0.6 5,641,610 - +0.6 5,641,610 - -0.5 5,641,610 - +1.6 5,641,679 - Pf6N2E2_4891 0.19 -1.3 5,641,679 - Pf6N2E2_4891 0.19 -1.4 5,641,765 + Pf6N2E2_4891 0.37 -2.0 5,641,765 + Pf6N2E2_4891 0.37 +0.1 5,641,765 + Pf6N2E2_4891 0.37 +0.4 5,641,765 + Pf6N2E2_4891 0.37 -0.9 5,641,765 + Pf6N2E2_4891 0.37 +1.1 5,641,765 + Pf6N2E2_4891 0.37 +0.7 5,641,765 + Pf6N2E2_4891 0.37 -0.1 5,641,766 - Pf6N2E2_4891 0.37 +0.5 5,641,766 - Pf6N2E2_4891 0.37 -2.9 5,641,766 - Pf6N2E2_4891 0.37 -0.7 5,641,766 - Pf6N2E2_4891 0.37 +1.4 5,641,766 - Pf6N2E2_4891 0.37 +1.5 5,641,766 - Pf6N2E2_4891 0.37 -0.7 5,641,769 + Pf6N2E2_4891 0.38 +1.5 5,641,769 + Pf6N2E2_4891 0.38 -1.9 5,641,769 + Pf6N2E2_4891 0.38 +2.1 5,641,770 - Pf6N2E2_4891 0.38 +1.7 5,641,770 - Pf6N2E2_4891 0.38 +0.1 5,641,890 + Pf6N2E2_4891 0.63 -1.9 5,641,891 - Pf6N2E2_4891 0.63 -1.1
Or see this region's nucleotide sequence