Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4691

Experiment: Zinc chloride 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4690 and Pf6N2E2_4691 are separated by 12 nucleotidesPf6N2E2_4691 and Pf6N2E2_4692 are separated by 38 nucleotidesPf6N2E2_4692 and Pf6N2E2_4693 are separated by 71 nucleotides Pf6N2E2_4690 - L-carnitine 3-dehydrogenase, A subunit (EC 1.1.1.108) (from data), at 5,423,964 to 5,424,929 _4690 Pf6N2E2_4691 - hypothetical protein, at 5,424,942 to 5,425,070 _4691 Pf6N2E2_4692 - dehydrocarnitine cleavage enzyme (EC 2.3.1.-) (from data), at 5,425,109 to 5,425,996 _4692 Pf6N2E2_4693 - ABC transporter for Carnitine Hydrochloride, periplasmic substrate-binding component (from data), at 5,426,068 to 5,427,012 _4693 Position (kb) 5424 5425 5426Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5424.066 kb on - strand, within Pf6N2E2_4690at 5424.066 kb on - strand, within Pf6N2E2_4690at 5424.066 kb on - strand, within Pf6N2E2_4690at 5424.142 kb on + strand, within Pf6N2E2_4690at 5424.142 kb on + strand, within Pf6N2E2_4690at 5424.142 kb on + strand, within Pf6N2E2_4690at 5424.143 kb on - strand, within Pf6N2E2_4690at 5424.143 kb on - strand, within Pf6N2E2_4690at 5424.220 kb on + strand, within Pf6N2E2_4690at 5424.220 kb on + strand, within Pf6N2E2_4690at 5424.220 kb on + strand, within Pf6N2E2_4690at 5424.221 kb on - strand, within Pf6N2E2_4690at 5424.221 kb on - strand, within Pf6N2E2_4690at 5424.221 kb on - strand, within Pf6N2E2_4690at 5424.415 kb on + strand, within Pf6N2E2_4690at 5424.416 kb on - strand, within Pf6N2E2_4690at 5424.416 kb on - strand, within Pf6N2E2_4690at 5424.416 kb on - strand, within Pf6N2E2_4690at 5424.490 kb on + strand, within Pf6N2E2_4690at 5424.491 kb on - strand, within Pf6N2E2_4690at 5424.547 kb on + strand, within Pf6N2E2_4690at 5424.548 kb on - strand, within Pf6N2E2_4690at 5424.575 kb on + strand, within Pf6N2E2_4690at 5424.575 kb on + strand, within Pf6N2E2_4690at 5424.831 kb on - strand, within Pf6N2E2_4690at 5424.880 kb on - strandat 5424.880 kb on - strandat 5424.921 kb on - strandat 5425.016 kb on + strand, within Pf6N2E2_4691at 5425.016 kb on + strand, within Pf6N2E2_4691at 5425.099 kb on + strandat 5425.099 kb on + strandat 5425.100 kb on - strandat 5425.100 kb on - strandat 5425.100 kb on - strandat 5425.100 kb on - strandat 5425.226 kb on + strand, within Pf6N2E2_4692at 5425.226 kb on + strand, within Pf6N2E2_4692at 5425.226 kb on + strand, within Pf6N2E2_4692at 5425.227 kb on - strand, within Pf6N2E2_4692at 5425.227 kb on - strand, within Pf6N2E2_4692at 5425.572 kb on + strand, within Pf6N2E2_4692at 5425.572 kb on + strand, within Pf6N2E2_4692at 5425.572 kb on + strand, within Pf6N2E2_4692at 5425.572 kb on + strand, within Pf6N2E2_4692at 5425.572 kb on + strand, within Pf6N2E2_4692at 5425.572 kb on + strand, within Pf6N2E2_4692at 5425.572 kb on + strand, within Pf6N2E2_4692at 5425.572 kb on + strand, within Pf6N2E2_4692at 5425.572 kb on + strand, within Pf6N2E2_4692at 5425.573 kb on - strand, within Pf6N2E2_4692at 5425.573 kb on - strand, within Pf6N2E2_4692at 5425.573 kb on - strand, within Pf6N2E2_4692at 5425.573 kb on - strand, within Pf6N2E2_4692at 5425.573 kb on - strand, within Pf6N2E2_4692at 5425.573 kb on - strand, within Pf6N2E2_4692at 5425.573 kb on - strand, within Pf6N2E2_4692at 5425.804 kb on - strand, within Pf6N2E2_4692at 5426.020 kb on + strandat 5426.020 kb on + strandat 5426.020 kb on + strandat 5426.021 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
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5,424,066 - Pf6N2E2_4690 0.11 +1.2
5,424,066 - Pf6N2E2_4690 0.11 +0.9
5,424,066 - Pf6N2E2_4690 0.11 +0.1
5,424,142 + Pf6N2E2_4690 0.18 +1.7
5,424,142 + Pf6N2E2_4690 0.18 +1.9
5,424,142 + Pf6N2E2_4690 0.18 -2.1
5,424,143 - Pf6N2E2_4690 0.19 -2.6
5,424,143 - Pf6N2E2_4690 0.19 +2.1
5,424,220 + Pf6N2E2_4690 0.27 +1.6
5,424,220 + Pf6N2E2_4690 0.27 +1.7
5,424,220 + Pf6N2E2_4690 0.27 +1.3
5,424,221 - Pf6N2E2_4690 0.27 +0.1
5,424,221 - Pf6N2E2_4690 0.27 +0.4
5,424,221 - Pf6N2E2_4690 0.27 -0.9
5,424,415 + Pf6N2E2_4690 0.47 -0.7
5,424,416 - Pf6N2E2_4690 0.47 +0.1
5,424,416 - Pf6N2E2_4690 0.47 -2.4
5,424,416 - Pf6N2E2_4690 0.47 -0.4
5,424,490 + Pf6N2E2_4690 0.54 -0.3
5,424,491 - Pf6N2E2_4690 0.55 +0.6
5,424,547 + Pf6N2E2_4690 0.60 -2.8
5,424,548 - Pf6N2E2_4690 0.60 +1.0
5,424,575 + Pf6N2E2_4690 0.63 -0.3
5,424,575 + Pf6N2E2_4690 0.63 -4.1
5,424,831 - Pf6N2E2_4690 0.90 +1.4
5,424,880 - +0.5
5,424,880 - +1.7
5,424,921 - -2.1
5,425,016 + Pf6N2E2_4691 0.57 -1.2
5,425,016 + Pf6N2E2_4691 0.57 -2.6
5,425,099 + -2.4
5,425,099 + -0.5
5,425,100 - +0.6
5,425,100 - -1.1
5,425,100 - -2.8
5,425,100 - -0.2
5,425,226 + Pf6N2E2_4692 0.13 +0.4
5,425,226 + Pf6N2E2_4692 0.13 +0.5
5,425,226 + Pf6N2E2_4692 0.13 +1.5
5,425,227 - Pf6N2E2_4692 0.13 -2.2
5,425,227 - Pf6N2E2_4692 0.13 +0.4
5,425,572 + Pf6N2E2_4692 0.52 -0.6
5,425,572 + Pf6N2E2_4692 0.52 +1.8
5,425,572 + Pf6N2E2_4692 0.52 +1.8
5,425,572 + Pf6N2E2_4692 0.52 +2.5
5,425,572 + Pf6N2E2_4692 0.52 +1.6
5,425,572 + Pf6N2E2_4692 0.52 +0.1
5,425,572 + Pf6N2E2_4692 0.52 -0.5
5,425,572 + Pf6N2E2_4692 0.52 +1.2
5,425,572 + Pf6N2E2_4692 0.52 -1.5
5,425,573 - Pf6N2E2_4692 0.52 -1.9
5,425,573 - Pf6N2E2_4692 0.52 +1.3
5,425,573 - Pf6N2E2_4692 0.52 +0.7
5,425,573 - Pf6N2E2_4692 0.52 +1.8
5,425,573 - Pf6N2E2_4692 0.52 -0.8
5,425,573 - Pf6N2E2_4692 0.52 +1.2
5,425,573 - Pf6N2E2_4692 0.52 +1.0
5,425,804 - Pf6N2E2_4692 0.78 -1.9
5,426,020 + +0.9
5,426,020 + -1.0
5,426,020 + +0.6
5,426,021 - -1.9

Or see this region's nucleotide sequence