Experiment: Zinc chloride 0.0000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4296 and Pf6N2E2_4297 are separated by 429 nucleotides Pf6N2E2_4297 and Pf6N2E2_4298 are separated by 32 nucleotides Pf6N2E2_4298 and Pf6N2E2_4299 are separated by 25 nucleotides
Pf6N2E2_4296 - VgrG protein, at 5,008,578 to 5,010,641
_4296
Pf6N2E2_4297 - Uncharacterized protein ImpA, at 5,011,071 to 5,012,627
_4297
Pf6N2E2_4298 - Uncharacterized protein ImpB, at 5,012,660 to 5,013,163
_4298
Pf6N2E2_4299 - Uncharacterized protein ImpC, at 5,013,189 to 5,014,664
_4299
Position (kb) 5011
5012
5013 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5010.082 kb on - strand, within Pf6N2E2_4296 at 5010.082 kb on - strand, within Pf6N2E2_4296 at 5010.102 kb on + strand, within Pf6N2E2_4296 at 5010.103 kb on - strand, within Pf6N2E2_4296 at 5010.103 kb on - strand, within Pf6N2E2_4296 at 5010.235 kb on - strand, within Pf6N2E2_4296 at 5010.369 kb on + strand, within Pf6N2E2_4296 at 5010.377 kb on - strand, within Pf6N2E2_4296 at 5010.408 kb on + strand, within Pf6N2E2_4296 at 5010.418 kb on + strand, within Pf6N2E2_4296 at 5010.418 kb on + strand, within Pf6N2E2_4296 at 5010.535 kb on + strand at 5010.546 kb on - strand at 5010.546 kb on - strand at 5010.546 kb on - strand at 5010.571 kb on - strand at 5010.573 kb on + strand at 5010.574 kb on - strand at 5010.574 kb on - strand at 5010.574 kb on - strand at 5010.574 kb on - strand at 5010.632 kb on + strand at 5010.736 kb on + strand at 5010.736 kb on + strand at 5010.736 kb on + strand at 5011.019 kb on + strand at 5011.173 kb on + strand at 5011.323 kb on + strand, within Pf6N2E2_4297 at 5011.323 kb on + strand, within Pf6N2E2_4297 at 5011.323 kb on + strand, within Pf6N2E2_4297 at 5011.382 kb on + strand, within Pf6N2E2_4297 at 5011.382 kb on + strand, within Pf6N2E2_4297 at 5011.383 kb on - strand, within Pf6N2E2_4297 at 5011.838 kb on + strand, within Pf6N2E2_4297 at 5011.838 kb on + strand, within Pf6N2E2_4297 at 5011.839 kb on - strand, within Pf6N2E2_4297 at 5011.839 kb on - strand, within Pf6N2E2_4297 at 5011.932 kb on + strand, within Pf6N2E2_4297 at 5011.933 kb on - strand, within Pf6N2E2_4297 at 5011.933 kb on - strand, within Pf6N2E2_4297 at 5011.960 kb on - strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.044 kb on + strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.045 kb on - strand, within Pf6N2E2_4297 at 5012.099 kb on - strand, within Pf6N2E2_4297 at 5012.099 kb on - strand, within Pf6N2E2_4297 at 5012.148 kb on - strand, within Pf6N2E2_4297 at 5012.418 kb on + strand, within Pf6N2E2_4297 at 5012.419 kb on - strand, within Pf6N2E2_4297 at 5012.419 kb on - strand, within Pf6N2E2_4297 at 5012.480 kb on + strand at 5012.480 kb on + strand at 5012.539 kb on + strand at 5012.540 kb on - strand at 5012.540 kb on - strand at 5012.540 kb on - strand at 5012.540 kb on - strand at 5012.560 kb on + strand at 5012.560 kb on + strand at 5012.583 kb on + strand at 5012.584 kb on - strand at 5012.625 kb on + strand at 5012.626 kb on - strand at 5012.777 kb on + strand, within Pf6N2E2_4298 at 5012.777 kb on + strand, within Pf6N2E2_4298 at 5012.777 kb on + strand, within Pf6N2E2_4298 at 5012.778 kb on - strand, within Pf6N2E2_4298 at 5012.935 kb on - strand, within Pf6N2E2_4298 at 5012.935 kb on - strand, within Pf6N2E2_4298 at 5013.166 kb on - strand at 5013.194 kb on + strand at 5013.194 kb on + strand at 5013.194 kb on + strand at 5013.195 kb on - strand at 5013.195 kb on - strand at 5013.195 kb on - strand at 5013.205 kb on + strand at 5013.235 kb on - strand at 5013.291 kb on + strand at 5013.526 kb on + strand, within Pf6N2E2_4299 at 5013.526 kb on + strand, within Pf6N2E2_4299 at 5013.526 kb on + strand, within Pf6N2E2_4299 at 5013.527 kb on - strand, within Pf6N2E2_4299 at 5013.527 kb on - strand, within Pf6N2E2_4299 at 5013.527 kb on - strand, within Pf6N2E2_4299 at 5013.527 kb on - strand, within Pf6N2E2_4299 at 5013.603 kb on + strand, within Pf6N2E2_4299 at 5013.603 kb on + strand, within Pf6N2E2_4299 at 5013.603 kb on + strand, within Pf6N2E2_4299 at 5013.603 kb on + strand, within Pf6N2E2_4299 at 5013.603 kb on + strand, within Pf6N2E2_4299 at 5013.604 kb on - strand, within Pf6N2E2_4299 at 5013.604 kb on - strand, within Pf6N2E2_4299 at 5013.604 kb on - strand, within Pf6N2E2_4299 at 5013.604 kb on - strand, within Pf6N2E2_4299 at 5013.604 kb on - strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.611 kb on + strand, within Pf6N2E2_4299 at 5013.612 kb on - strand, within Pf6N2E2_4299 at 5013.612 kb on - strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.615 kb on + strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.616 kb on - strand, within Pf6N2E2_4299 at 5013.627 kb on + strand, within Pf6N2E2_4299 at 5013.627 kb on + strand, within Pf6N2E2_4299
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M remove 5,010,082 - Pf6N2E2_4296 0.73 +0.9 5,010,082 - Pf6N2E2_4296 0.73 -0.4 5,010,102 + Pf6N2E2_4296 0.74 +0.5 5,010,103 - Pf6N2E2_4296 0.74 -1.7 5,010,103 - Pf6N2E2_4296 0.74 -0.3 5,010,235 - Pf6N2E2_4296 0.80 -0.9 5,010,369 + Pf6N2E2_4296 0.87 -3.1 5,010,377 - Pf6N2E2_4296 0.87 -2.4 5,010,408 + Pf6N2E2_4296 0.89 -0.7 5,010,418 + Pf6N2E2_4296 0.89 -1.7 5,010,418 + Pf6N2E2_4296 0.89 -1.8 5,010,535 + +0.6 5,010,546 - +1.5 5,010,546 - -0.6 5,010,546 - -1.2 5,010,571 - +0.4 5,010,573 + +0.4 5,010,574 - +0.5 5,010,574 - -0.6 5,010,574 - -0.1 5,010,574 - -2.9 5,010,632 + -0.1 5,010,736 + +0.4 5,010,736 + -0.6 5,010,736 + -0.8 5,011,019 + +0.8 5,011,173 + -0.3 5,011,323 + Pf6N2E2_4297 0.16 +0.6 5,011,323 + Pf6N2E2_4297 0.16 +0.2 5,011,323 + Pf6N2E2_4297 0.16 +0.3 5,011,382 + Pf6N2E2_4297 0.20 +0.5 5,011,382 + Pf6N2E2_4297 0.20 +1.4 5,011,383 - Pf6N2E2_4297 0.20 +1.7 5,011,838 + Pf6N2E2_4297 0.49 -1.5 5,011,838 + Pf6N2E2_4297 0.49 +2.2 5,011,839 - Pf6N2E2_4297 0.49 +1.4 5,011,839 - Pf6N2E2_4297 0.49 +1.2 5,011,932 + Pf6N2E2_4297 0.55 -2.7 5,011,933 - Pf6N2E2_4297 0.55 +0.4 5,011,933 - Pf6N2E2_4297 0.55 +0.8 5,011,960 - Pf6N2E2_4297 0.57 -0.2 5,012,044 + Pf6N2E2_4297 0.62 +1.5 5,012,044 + Pf6N2E2_4297 0.62 -2.3 5,012,044 + Pf6N2E2_4297 0.62 -1.4 5,012,044 + Pf6N2E2_4297 0.62 +0.3 5,012,044 + Pf6N2E2_4297 0.62 -0.9 5,012,044 + Pf6N2E2_4297 0.62 +1.9 5,012,044 + Pf6N2E2_4297 0.62 +0.8 5,012,044 + Pf6N2E2_4297 0.62 -1.4 5,012,045 - Pf6N2E2_4297 0.63 +0.2 5,012,045 - Pf6N2E2_4297 0.63 -2.6 5,012,045 - Pf6N2E2_4297 0.63 +2.2 5,012,045 - Pf6N2E2_4297 0.63 -0.7 5,012,045 - Pf6N2E2_4297 0.63 -2.8 5,012,045 - Pf6N2E2_4297 0.63 +1.8 5,012,045 - Pf6N2E2_4297 0.63 +2.9 5,012,045 - Pf6N2E2_4297 0.63 -1.0 5,012,045 - Pf6N2E2_4297 0.63 -1.0 5,012,045 - Pf6N2E2_4297 0.63 +0.0 5,012,099 - Pf6N2E2_4297 0.66 +1.7 5,012,099 - Pf6N2E2_4297 0.66 -0.7 5,012,148 - Pf6N2E2_4297 0.69 +1.2 5,012,418 + Pf6N2E2_4297 0.87 +3.4 5,012,419 - Pf6N2E2_4297 0.87 -0.6 5,012,419 - Pf6N2E2_4297 0.87 +1.1 5,012,480 + +0.5 5,012,480 + +0.1 5,012,539 + +0.3 5,012,540 - -1.7 5,012,540 - +1.4 5,012,540 - -0.0 5,012,540 - -1.6 5,012,560 + -1.0 5,012,560 + +1.4 5,012,583 + +0.9 5,012,584 - +0.4 5,012,625 + +0.4 5,012,626 - +0.6 5,012,777 + Pf6N2E2_4298 0.23 +0.0 5,012,777 + Pf6N2E2_4298 0.23 -0.6 5,012,777 + Pf6N2E2_4298 0.23 +1.1 5,012,778 - Pf6N2E2_4298 0.23 +1.3 5,012,935 - Pf6N2E2_4298 0.55 +1.8 5,012,935 - Pf6N2E2_4298 0.55 -1.9 5,013,166 - -1.2 5,013,194 + -1.2 5,013,194 + +1.3 5,013,194 + +1.8 5,013,195 - -2.1 5,013,195 - +0.6 5,013,195 - -0.8 5,013,205 + +0.8 5,013,235 - +0.7 5,013,291 + -0.7 5,013,526 + Pf6N2E2_4299 0.23 +0.1 5,013,526 + Pf6N2E2_4299 0.23 +1.1 5,013,526 + Pf6N2E2_4299 0.23 +1.5 5,013,527 - Pf6N2E2_4299 0.23 -0.5 5,013,527 - Pf6N2E2_4299 0.23 -0.4 5,013,527 - Pf6N2E2_4299 0.23 -1.2 5,013,527 - Pf6N2E2_4299 0.23 -0.6 5,013,603 + Pf6N2E2_4299 0.28 +1.2 5,013,603 + Pf6N2E2_4299 0.28 -0.1 5,013,603 + Pf6N2E2_4299 0.28 +0.5 5,013,603 + Pf6N2E2_4299 0.28 +0.0 5,013,603 + Pf6N2E2_4299 0.28 -0.6 5,013,604 - Pf6N2E2_4299 0.28 -0.5 5,013,604 - Pf6N2E2_4299 0.28 +0.7 5,013,604 - Pf6N2E2_4299 0.28 +1.1 5,013,604 - Pf6N2E2_4299 0.28 +0.6 5,013,604 - Pf6N2E2_4299 0.28 +0.8 5,013,611 + Pf6N2E2_4299 0.29 +0.6 5,013,611 + Pf6N2E2_4299 0.29 -0.2 5,013,611 + Pf6N2E2_4299 0.29 -2.3 5,013,611 + Pf6N2E2_4299 0.29 +0.5 5,013,611 + Pf6N2E2_4299 0.29 +1.1 5,013,611 + Pf6N2E2_4299 0.29 +1.9 5,013,611 + Pf6N2E2_4299 0.29 -1.3 5,013,611 + Pf6N2E2_4299 0.29 +1.9 5,013,611 + Pf6N2E2_4299 0.29 -0.1 5,013,612 - Pf6N2E2_4299 0.29 -2.4 5,013,612 - Pf6N2E2_4299 0.29 +1.4 5,013,615 + Pf6N2E2_4299 0.29 +0.3 5,013,615 + Pf6N2E2_4299 0.29 +0.8 5,013,615 + Pf6N2E2_4299 0.29 -0.7 5,013,615 + Pf6N2E2_4299 0.29 -0.3 5,013,615 + Pf6N2E2_4299 0.29 -0.6 5,013,615 + Pf6N2E2_4299 0.29 -0.3 5,013,616 - Pf6N2E2_4299 0.29 +0.4 5,013,616 - Pf6N2E2_4299 0.29 -0.6 5,013,616 - Pf6N2E2_4299 0.29 -3.2 5,013,616 - Pf6N2E2_4299 0.29 +0.5 5,013,616 - Pf6N2E2_4299 0.29 +0.0 5,013,616 - Pf6N2E2_4299 0.29 +0.7 5,013,616 - Pf6N2E2_4299 0.29 -2.2 5,013,616 - Pf6N2E2_4299 0.29 +0.2 5,013,627 + Pf6N2E2_4299 0.30 +0.5 5,013,627 + Pf6N2E2_4299 0.30 +0.3
Or see this region's nucleotide sequence