Experiment: Zinc chloride 0.0000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3023 and Pf6N2E2_3024 are separated by 0 nucleotides Pf6N2E2_3024 and Pf6N2E2_3025 overlap by 4 nucleotides Pf6N2E2_3025 and Pf6N2E2_3026 overlap by 4 nucleotides Pf6N2E2_3026 and Pf6N2E2_3027 are separated by 11 nucleotides Pf6N2E2_3027 and Pf6N2E2_3028 are separated by 3 nucleotides
Pf6N2E2_3023 - Prophage long tail fiber protein, at 3,508,533 to 3,510,611
_3023
Pf6N2E2_3024 - Phage tail fibers, at 3,510,612 to 3,511,247
_3024
Pf6N2E2_3025 - Baseplate assembly protein J, at 3,511,244 to 3,512,239
_3025
Pf6N2E2_3026 - Baseplate assembly protein W, at 3,512,236 to 3,512,568
_3026
Pf6N2E2_3027 - Baseplate assembly protein V, at 3,512,580 to 3,513,191
_3027
Pf6N2E2_3028 - FIG00959937: hypothetical protein, at 3,513,195 to 3,513,707
_3028
Position (kb)
3511
3512
3513 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3510.298 kb on + strand, within Pf6N2E2_3023 at 3510.355 kb on + strand, within Pf6N2E2_3023 at 3510.355 kb on + strand, within Pf6N2E2_3023 at 3510.356 kb on - strand, within Pf6N2E2_3023 at 3510.490 kb on + strand at 3510.598 kb on + strand at 3510.598 kb on + strand at 3510.598 kb on + strand at 3510.598 kb on + strand at 3510.599 kb on - strand at 3510.613 kb on + strand at 3510.613 kb on + strand at 3510.613 kb on + strand at 3510.614 kb on - strand at 3510.628 kb on + strand at 3510.628 kb on + strand at 3510.628 kb on + strand at 3510.632 kb on + strand at 3510.632 kb on + strand at 3510.632 kb on + strand at 3510.632 kb on + strand at 3510.632 kb on + strand at 3510.632 kb on + strand at 3510.633 kb on - strand at 3510.652 kb on + strand at 3510.859 kb on + strand, within Pf6N2E2_3024 at 3510.859 kb on + strand, within Pf6N2E2_3024 at 3511.091 kb on - strand, within Pf6N2E2_3024 at 3511.247 kb on + strand at 3511.248 kb on - strand at 3511.366 kb on - strand, within Pf6N2E2_3025 at 3511.419 kb on + strand, within Pf6N2E2_3025 at 3511.420 kb on - strand, within Pf6N2E2_3025 at 3511.504 kb on - strand, within Pf6N2E2_3025 at 3511.716 kb on + strand, within Pf6N2E2_3025 at 3511.716 kb on + strand, within Pf6N2E2_3025 at 3511.716 kb on + strand, within Pf6N2E2_3025 at 3511.717 kb on - strand, within Pf6N2E2_3025 at 3511.717 kb on - strand, within Pf6N2E2_3025 at 3511.730 kb on + strand, within Pf6N2E2_3025 at 3511.730 kb on + strand, within Pf6N2E2_3025 at 3511.730 kb on + strand, within Pf6N2E2_3025 at 3511.731 kb on - strand, within Pf6N2E2_3025 at 3511.780 kb on + strand, within Pf6N2E2_3025 at 3511.840 kb on - strand, within Pf6N2E2_3025 at 3511.840 kb on - strand, within Pf6N2E2_3025 at 3511.873 kb on - strand, within Pf6N2E2_3025 at 3512.010 kb on + strand, within Pf6N2E2_3025 at 3512.010 kb on + strand, within Pf6N2E2_3025 at 3512.011 kb on - strand, within Pf6N2E2_3025 at 3512.011 kb on - strand, within Pf6N2E2_3025 at 3512.011 kb on - strand, within Pf6N2E2_3025 at 3512.133 kb on + strand, within Pf6N2E2_3025 at 3512.133 kb on + strand, within Pf6N2E2_3025 at 3512.133 kb on + strand, within Pf6N2E2_3025 at 3512.134 kb on - strand, within Pf6N2E2_3025 at 3512.366 kb on + strand, within Pf6N2E2_3026 at 3512.367 kb on - strand, within Pf6N2E2_3026 at 3512.453 kb on + strand, within Pf6N2E2_3026 at 3512.453 kb on + strand, within Pf6N2E2_3026 at 3512.454 kb on - strand, within Pf6N2E2_3026 at 3512.454 kb on - strand, within Pf6N2E2_3026 at 3512.454 kb on - strand, within Pf6N2E2_3026 at 3512.454 kb on - strand, within Pf6N2E2_3026 at 3512.454 kb on - strand, within Pf6N2E2_3026 at 3512.512 kb on + strand, within Pf6N2E2_3026 at 3512.512 kb on + strand, within Pf6N2E2_3026 at 3512.548 kb on - strand at 3512.582 kb on - strand at 3512.721 kb on - strand, within Pf6N2E2_3027 at 3513.214 kb on + strand at 3513.214 kb on + strand at 3513.214 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M remove 3,510,298 + Pf6N2E2_3023 0.85 +1.0 3,510,355 + Pf6N2E2_3023 0.88 +2.4 3,510,355 + Pf6N2E2_3023 0.88 +0.9 3,510,356 - Pf6N2E2_3023 0.88 +0.6 3,510,490 + +1.6 3,510,598 + +0.7 3,510,598 + -0.3 3,510,598 + -0.8 3,510,598 + -1.4 3,510,599 - +1.0 3,510,613 + +0.9 3,510,613 + +0.9 3,510,613 + -0.7 3,510,614 - -1.4 3,510,628 + -0.4 3,510,628 + -1.3 3,510,628 + -2.6 3,510,632 + +1.7 3,510,632 + +0.3 3,510,632 + +0.6 3,510,632 + +0.9 3,510,632 + -1.1 3,510,632 + -0.3 3,510,633 - -0.9 3,510,652 + -2.0 3,510,859 + Pf6N2E2_3024 0.39 -0.8 3,510,859 + Pf6N2E2_3024 0.39 -1.3 3,511,091 - Pf6N2E2_3024 0.75 -0.2 3,511,247 + -1.8 3,511,248 - +0.2 3,511,366 - Pf6N2E2_3025 0.12 -0.0 3,511,419 + Pf6N2E2_3025 0.18 +0.8 3,511,420 - Pf6N2E2_3025 0.18 +3.0 3,511,504 - Pf6N2E2_3025 0.26 +1.3 3,511,716 + Pf6N2E2_3025 0.47 +1.0 3,511,716 + Pf6N2E2_3025 0.47 +0.6 3,511,716 + Pf6N2E2_3025 0.47 -1.3 3,511,717 - Pf6N2E2_3025 0.47 +0.7 3,511,717 - Pf6N2E2_3025 0.47 -0.6 3,511,730 + Pf6N2E2_3025 0.49 +1.0 3,511,730 + Pf6N2E2_3025 0.49 -0.4 3,511,730 + Pf6N2E2_3025 0.49 +0.5 3,511,731 - Pf6N2E2_3025 0.49 -0.5 3,511,780 + Pf6N2E2_3025 0.54 +0.1 3,511,840 - Pf6N2E2_3025 0.60 -2.2 3,511,840 - Pf6N2E2_3025 0.60 +1.0 3,511,873 - Pf6N2E2_3025 0.63 +1.8 3,512,010 + Pf6N2E2_3025 0.77 -0.7 3,512,010 + Pf6N2E2_3025 0.77 -2.6 3,512,011 - Pf6N2E2_3025 0.77 -2.9 3,512,011 - Pf6N2E2_3025 0.77 -1.8 3,512,011 - Pf6N2E2_3025 0.77 +0.1 3,512,133 + Pf6N2E2_3025 0.89 +0.5 3,512,133 + Pf6N2E2_3025 0.89 +0.1 3,512,133 + Pf6N2E2_3025 0.89 +1.6 3,512,134 - Pf6N2E2_3025 0.89 -1.3 3,512,366 + Pf6N2E2_3026 0.39 -1.2 3,512,367 - Pf6N2E2_3026 0.39 -1.9 3,512,453 + Pf6N2E2_3026 0.65 -1.7 3,512,453 + Pf6N2E2_3026 0.65 +0.5 3,512,454 - Pf6N2E2_3026 0.65 -2.2 3,512,454 - Pf6N2E2_3026 0.65 +1.1 3,512,454 - Pf6N2E2_3026 0.65 -3.0 3,512,454 - Pf6N2E2_3026 0.65 +0.8 3,512,454 - Pf6N2E2_3026 0.65 -0.3 3,512,512 + Pf6N2E2_3026 0.83 -0.5 3,512,512 + Pf6N2E2_3026 0.83 +0.2 3,512,548 - +0.4 3,512,582 - -0.3 3,512,721 - Pf6N2E2_3027 0.23 +0.3 3,513,214 + -2.0 3,513,214 + -1.6 3,513,214 + +2.1
Or see this region's nucleotide sequence