Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3021

Experiment: Zinc chloride 0.0000015625 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3020 and Pf6N2E2_3021 are separated by 2 nucleotidesPf6N2E2_3021 and Pf6N2E2_3022 are separated by 90 nucleotidesPf6N2E2_3022 and Pf6N2E2_3023 are separated by 410 nucleotides Pf6N2E2_3020 - Phage tail sheath monomer, at 3,506,255 to 3,507,421 _3020 Pf6N2E2_3021 - hypothetical protein, at 3,507,424 to 3,507,633 _3021 Pf6N2E2_3022 - hypothetical protein, at 3,507,724 to 3,508,122 _3022 Pf6N2E2_3023 - Prophage long tail fiber protein, at 3,508,533 to 3,510,611 _3023 Position (kb) 3507 3508Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3506.571 kb on + strand, within Pf6N2E2_3020at 3506.571 kb on + strand, within Pf6N2E2_3020at 3506.643 kb on + strand, within Pf6N2E2_3020at 3506.643 kb on + strand, within Pf6N2E2_3020at 3506.700 kb on + strand, within Pf6N2E2_3020at 3506.701 kb on - strand, within Pf6N2E2_3020at 3506.701 kb on - strand, within Pf6N2E2_3020at 3506.701 kb on - strand, within Pf6N2E2_3020at 3506.731 kb on - strand, within Pf6N2E2_3020at 3506.731 kb on - strand, within Pf6N2E2_3020at 3506.835 kb on + strand, within Pf6N2E2_3020at 3506.835 kb on + strand, within Pf6N2E2_3020at 3506.836 kb on - strand, within Pf6N2E2_3020at 3506.836 kb on - strand, within Pf6N2E2_3020at 3506.907 kb on + strand, within Pf6N2E2_3020at 3506.907 kb on + strand, within Pf6N2E2_3020at 3506.907 kb on + strand, within Pf6N2E2_3020at 3506.908 kb on - strand, within Pf6N2E2_3020at 3506.908 kb on - strand, within Pf6N2E2_3020at 3506.908 kb on - strand, within Pf6N2E2_3020at 3506.908 kb on - strand, within Pf6N2E2_3020at 3506.908 kb on - strand, within Pf6N2E2_3020at 3506.908 kb on - strand, within Pf6N2E2_3020at 3506.908 kb on - strand, within Pf6N2E2_3020at 3507.162 kb on + strand, within Pf6N2E2_3020at 3507.425 kb on + strandat 3507.607 kb on + strand, within Pf6N2E2_3021at 3507.614 kb on + strandat 3507.614 kb on + strandat 3507.614 kb on + strandat 3507.614 kb on + strandat 3507.615 kb on - strandat 3507.726 kb on - strandat 3508.046 kb on - strand, within Pf6N2E2_3022at 3508.109 kb on - strandat 3508.109 kb on - strandat 3508.122 kb on + strandat 3508.123 kb on - strandat 3508.140 kb on + strandat 3508.140 kb on + strandat 3508.140 kb on + strandat 3508.141 kb on - strandat 3508.141 kb on - strandat 3508.143 kb on + strandat 3508.429 kb on + strandat 3508.430 kb on - strandat 3508.498 kb on + strandat 3508.499 kb on - strandat 3508.534 kb on + strandat 3508.535 kb on - strandat 3508.535 kb on - strandat 3508.535 kb on - strandat 3508.535 kb on - strandat 3508.537 kb on + strandat 3508.538 kb on - strandat 3508.538 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
remove
3,506,571 + Pf6N2E2_3020 0.27 -0.6
3,506,571 + Pf6N2E2_3020 0.27 -1.0
3,506,643 + Pf6N2E2_3020 0.33 +0.4
3,506,643 + Pf6N2E2_3020 0.33 +0.2
3,506,700 + Pf6N2E2_3020 0.38 +1.1
3,506,701 - Pf6N2E2_3020 0.38 -2.0
3,506,701 - Pf6N2E2_3020 0.38 +1.5
3,506,701 - Pf6N2E2_3020 0.38 -0.3
3,506,731 - Pf6N2E2_3020 0.41 -1.8
3,506,731 - Pf6N2E2_3020 0.41 +0.6
3,506,835 + Pf6N2E2_3020 0.50 -0.2
3,506,835 + Pf6N2E2_3020 0.50 +0.5
3,506,836 - Pf6N2E2_3020 0.50 -2.0
3,506,836 - Pf6N2E2_3020 0.50 -0.1
3,506,907 + Pf6N2E2_3020 0.56 +1.4
3,506,907 + Pf6N2E2_3020 0.56 +0.5
3,506,907 + Pf6N2E2_3020 0.56 -2.3
3,506,908 - Pf6N2E2_3020 0.56 +1.2
3,506,908 - Pf6N2E2_3020 0.56 +0.1
3,506,908 - Pf6N2E2_3020 0.56 -1.6
3,506,908 - Pf6N2E2_3020 0.56 -0.7
3,506,908 - Pf6N2E2_3020 0.56 -2.6
3,506,908 - Pf6N2E2_3020 0.56 -1.0
3,506,908 - Pf6N2E2_3020 0.56 -0.4
3,507,162 + Pf6N2E2_3020 0.78 -2.0
3,507,425 + -1.1
3,507,607 + Pf6N2E2_3021 0.87 +1.2
3,507,614 + -1.4
3,507,614 + -1.7
3,507,614 + -2.0
3,507,614 + -3.0
3,507,615 - +2.5
3,507,726 - -2.7
3,508,046 - Pf6N2E2_3022 0.81 -1.4
3,508,109 - +0.3
3,508,109 - +1.5
3,508,122 + -0.0
3,508,123 - +0.6
3,508,140 + +3.0
3,508,140 + -0.7
3,508,140 + +0.8
3,508,141 - +0.1
3,508,141 - -1.2
3,508,143 + +1.3
3,508,429 + -2.1
3,508,430 - +0.4
3,508,498 + -0.8
3,508,499 - +1.1
3,508,534 + +0.6
3,508,535 - -1.3
3,508,535 - +0.3
3,508,535 - +0.4
3,508,535 - +2.6
3,508,537 + -1.1
3,508,538 - -2.3
3,508,538 - +2.0

Or see this region's nucleotide sequence