Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2969

Experiment: Zinc chloride 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2966 and Pf6N2E2_2967 are separated by 354 nucleotidesPf6N2E2_2967 and Pf6N2E2_2968 are separated by 31 nucleotidesPf6N2E2_2968 and Pf6N2E2_2969 are separated by 35 nucleotidesPf6N2E2_2969 and Pf6N2E2_2970 are separated by 157 nucleotidesPf6N2E2_2970 and Pf6N2E2_2971 are separated by 44 nucleotides Pf6N2E2_2966 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 3,457,961 to 3,458,527 _2966 Pf6N2E2_2967 - Cold shock protein CspA, at 3,458,882 to 3,459,091 _2967 Pf6N2E2_2968 - hypothetical protein, at 3,459,123 to 3,459,251 _2968 Pf6N2E2_2969 - Peptide chain release factor RF-3, at 3,459,287 to 3,460,294 _2969 Pf6N2E2_2970 - methylated-DNA--protein-cysteine methyltransferase-related protein, at 3,460,452 to 3,460,805 _2970 Pf6N2E2_2971 - AmpG permease, at 3,460,850 to 3,462,409 _2971 Position (kb) 3459 3460 3461Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3458.575 kb on - strandat 3458.575 kb on - strandat 3458.678 kb on - strandat 3458.725 kb on - strandat 3458.772 kb on + strandat 3458.772 kb on + strandat 3458.772 kb on + strandat 3458.772 kb on + strandat 3458.772 kb on + strandat 3458.773 kb on - strandat 3458.773 kb on - strandat 3458.773 kb on - strandat 3458.797 kb on + strandat 3458.858 kb on + strandat 3458.858 kb on + strandat 3458.908 kb on + strand, within Pf6N2E2_2967at 3458.908 kb on + strand, within Pf6N2E2_2967at 3458.908 kb on + strand, within Pf6N2E2_2967at 3458.908 kb on + strand, within Pf6N2E2_2967at 3459.085 kb on + strandat 3459.089 kb on + strandat 3459.089 kb on + strandat 3459.089 kb on + strandat 3459.108 kb on + strandat 3459.430 kb on - strand, within Pf6N2E2_2969at 3459.435 kb on + strand, within Pf6N2E2_2969at 3459.436 kb on - strand, within Pf6N2E2_2969at 3459.436 kb on - strand, within Pf6N2E2_2969at 3459.516 kb on + strand, within Pf6N2E2_2969at 3459.517 kb on - strand, within Pf6N2E2_2969at 3459.517 kb on - strand, within Pf6N2E2_2969at 3459.517 kb on - strand, within Pf6N2E2_2969at 3459.517 kb on - strand, within Pf6N2E2_2969at 3459.517 kb on - strand, within Pf6N2E2_2969at 3459.541 kb on - strand, within Pf6N2E2_2969at 3459.541 kb on - strand, within Pf6N2E2_2969at 3459.541 kb on - strand, within Pf6N2E2_2969at 3459.568 kb on - strand, within Pf6N2E2_2969at 3459.573 kb on + strand, within Pf6N2E2_2969at 3459.574 kb on - strand, within Pf6N2E2_2969at 3459.696 kb on + strand, within Pf6N2E2_2969at 3459.696 kb on + strand, within Pf6N2E2_2969at 3459.697 kb on - strand, within Pf6N2E2_2969at 3459.697 kb on - strand, within Pf6N2E2_2969at 3459.804 kb on + strand, within Pf6N2E2_2969at 3459.804 kb on + strand, within Pf6N2E2_2969at 3459.804 kb on + strand, within Pf6N2E2_2969at 3459.804 kb on + strand, within Pf6N2E2_2969at 3459.804 kb on + strand, within Pf6N2E2_2969at 3459.804 kb on + strand, within Pf6N2E2_2969at 3459.805 kb on - strand, within Pf6N2E2_2969at 3459.805 kb on - strand, within Pf6N2E2_2969at 3459.821 kb on - strand, within Pf6N2E2_2969at 3460.068 kb on + strand, within Pf6N2E2_2969at 3460.068 kb on + strand, within Pf6N2E2_2969at 3460.068 kb on + strand, within Pf6N2E2_2969at 3460.069 kb on - strand, within Pf6N2E2_2969at 3460.069 kb on - strand, within Pf6N2E2_2969at 3460.069 kb on - strand, within Pf6N2E2_2969at 3460.069 kb on - strand, within Pf6N2E2_2969at 3460.069 kb on - strand, within Pf6N2E2_2969at 3460.069 kb on - strand, within Pf6N2E2_2969at 3460.069 kb on - strand, within Pf6N2E2_2969at 3460.069 kb on - strand, within Pf6N2E2_2969at 3460.069 kb on - strand, within Pf6N2E2_2969at 3460.069 kb on - strand, within Pf6N2E2_2969at 3460.107 kb on - strand, within Pf6N2E2_2969at 3460.149 kb on + strand, within Pf6N2E2_2969at 3460.286 kb on - strandat 3460.294 kb on + strandat 3460.294 kb on + strandat 3460.295 kb on - strandat 3460.295 kb on - strandat 3460.295 kb on - strandat 3460.295 kb on - strandat 3460.408 kb on + strandat 3460.409 kb on - strandat 3460.415 kb on + strandat 3460.415 kb on + strandat 3460.415 kb on + strandat 3460.415 kb on + strandat 3460.416 kb on - strandat 3460.416 kb on - strandat 3460.420 kb on + strandat 3460.420 kb on + strandat 3460.420 kb on + strandat 3460.449 kb on + strandat 3460.449 kb on + strandat 3460.450 kb on - strandat 3460.450 kb on - strandat 3460.510 kb on - strand, within Pf6N2E2_2970at 3460.510 kb on - strand, within Pf6N2E2_2970at 3460.763 kb on + strand, within Pf6N2E2_2970at 3460.763 kb on + strand, within Pf6N2E2_2970at 3460.764 kb on - strand, within Pf6N2E2_2970at 3460.859 kb on - strandat 3460.887 kb on - strandat 3460.943 kb on + strandat 3460.943 kb on + strandat 3460.943 kb on + strandat 3460.943 kb on + strandat 3460.944 kb on - strandat 3460.944 kb on - strandat 3460.944 kb on - strandat 3460.944 kb on - strandat 3460.950 kb on + strandat 3460.951 kb on - strandat 3460.951 kb on - strandat 3460.951 kb on - strandat 3460.951 kb on - strandat 3460.951 kb on - strandat 3461.036 kb on + strand, within Pf6N2E2_2971at 3461.036 kb on + strand, within Pf6N2E2_2971at 3461.036 kb on + strand, within Pf6N2E2_2971at 3461.037 kb on - strand, within Pf6N2E2_2971at 3461.037 kb on - strand, within Pf6N2E2_2971at 3461.037 kb on - strand, within Pf6N2E2_2971at 3461.044 kb on + strand, within Pf6N2E2_2971at 3461.044 kb on + strand, within Pf6N2E2_2971at 3461.044 kb on + strand, within Pf6N2E2_2971at 3461.044 kb on + strand, within Pf6N2E2_2971at 3461.044 kb on + strand, within Pf6N2E2_2971at 3461.044 kb on + strand, within Pf6N2E2_2971at 3461.044 kb on + strand, within Pf6N2E2_2971at 3461.044 kb on + strand, within Pf6N2E2_2971at 3461.045 kb on - strand, within Pf6N2E2_2971at 3461.142 kb on + strand, within Pf6N2E2_2971at 3461.142 kb on + strand, within Pf6N2E2_2971at 3461.143 kb on - strand, within Pf6N2E2_2971at 3461.143 kb on - strand, within Pf6N2E2_2971

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
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3,458,575 - +0.2
3,458,575 - -0.4
3,458,678 - +0.0
3,458,725 - -1.8
3,458,772 + -1.6
3,458,772 + +0.8
3,458,772 + +0.6
3,458,772 + -0.4
3,458,772 + +0.0
3,458,773 - -0.5
3,458,773 - +1.1
3,458,773 - -1.2
3,458,797 + +1.8
3,458,858 + -0.8
3,458,858 + +0.6
3,458,908 + Pf6N2E2_2967 0.12 -0.8
3,458,908 + Pf6N2E2_2967 0.12 +1.5
3,458,908 + Pf6N2E2_2967 0.12 -2.1
3,458,908 + Pf6N2E2_2967 0.12 +0.0
3,459,085 + -0.3
3,459,089 + -1.3
3,459,089 + -2.6
3,459,089 + +0.5
3,459,108 + +3.0
3,459,430 - Pf6N2E2_2969 0.14 +1.7
3,459,435 + Pf6N2E2_2969 0.15 +1.9
3,459,436 - Pf6N2E2_2969 0.15 -1.8
3,459,436 - Pf6N2E2_2969 0.15 +0.1
3,459,516 + Pf6N2E2_2969 0.23 +0.7
3,459,517 - Pf6N2E2_2969 0.23 +1.7
3,459,517 - Pf6N2E2_2969 0.23 +1.5
3,459,517 - Pf6N2E2_2969 0.23 +0.2
3,459,517 - Pf6N2E2_2969 0.23 +0.7
3,459,517 - Pf6N2E2_2969 0.23 -0.3
3,459,541 - Pf6N2E2_2969 0.25 +1.8
3,459,541 - Pf6N2E2_2969 0.25 +0.5
3,459,541 - Pf6N2E2_2969 0.25 +1.0
3,459,568 - Pf6N2E2_2969 0.28 +0.3
3,459,573 + Pf6N2E2_2969 0.28 +2.4
3,459,574 - Pf6N2E2_2969 0.28 +1.1
3,459,696 + Pf6N2E2_2969 0.41 +1.5
3,459,696 + Pf6N2E2_2969 0.41 +0.8
3,459,697 - Pf6N2E2_2969 0.41 +0.6
3,459,697 - Pf6N2E2_2969 0.41 +2.3
3,459,804 + Pf6N2E2_2969 0.51 +0.2
3,459,804 + Pf6N2E2_2969 0.51 -0.8
3,459,804 + Pf6N2E2_2969 0.51 +1.3
3,459,804 + Pf6N2E2_2969 0.51 +1.2
3,459,804 + Pf6N2E2_2969 0.51 +1.9
3,459,804 + Pf6N2E2_2969 0.51 -1.6
3,459,805 - Pf6N2E2_2969 0.51 +3.2
3,459,805 - Pf6N2E2_2969 0.51 -1.2
3,459,821 - Pf6N2E2_2969 0.53 +0.3
3,460,068 + Pf6N2E2_2969 0.77 -2.3
3,460,068 + Pf6N2E2_2969 0.77 +1.3
3,460,068 + Pf6N2E2_2969 0.77 +2.4
3,460,069 - Pf6N2E2_2969 0.78 +2.2
3,460,069 - Pf6N2E2_2969 0.78 +0.5
3,460,069 - Pf6N2E2_2969 0.78 -0.2
3,460,069 - Pf6N2E2_2969 0.78 +2.5
3,460,069 - Pf6N2E2_2969 0.78 +3.0
3,460,069 - Pf6N2E2_2969 0.78 +1.8
3,460,069 - Pf6N2E2_2969 0.78 +3.2
3,460,069 - Pf6N2E2_2969 0.78 -0.5
3,460,069 - Pf6N2E2_2969 0.78 +0.4
3,460,069 - Pf6N2E2_2969 0.78 -0.4
3,460,107 - Pf6N2E2_2969 0.81 +3.9
3,460,149 + Pf6N2E2_2969 0.86 +2.2
3,460,286 - -2.0
3,460,294 + -0.7
3,460,294 + +1.3
3,460,295 - -0.7
3,460,295 - +1.5
3,460,295 - -1.9
3,460,295 - -0.9
3,460,408 + +0.6
3,460,409 - +1.4
3,460,415 + -1.9
3,460,415 + +0.0
3,460,415 + +1.4
3,460,415 + +1.0
3,460,416 - +0.7
3,460,416 - -1.3
3,460,420 + +1.6
3,460,420 + -0.9
3,460,420 + +1.1
3,460,449 + +0.6
3,460,449 + +0.4
3,460,450 - +0.2
3,460,450 - +1.1
3,460,510 - Pf6N2E2_2970 0.16 +1.4
3,460,510 - Pf6N2E2_2970 0.16 +1.7
3,460,763 + Pf6N2E2_2970 0.88 -0.6
3,460,763 + Pf6N2E2_2970 0.88 +0.6
3,460,764 - Pf6N2E2_2970 0.88 -0.1
3,460,859 - -2.2
3,460,887 - -2.5
3,460,943 + -2.9
3,460,943 + -3.0
3,460,943 + -2.7
3,460,943 + -2.3
3,460,944 - +1.2
3,460,944 - -2.8
3,460,944 - -1.7
3,460,944 - -3.5
3,460,950 + -1.8
3,460,951 - -1.5
3,460,951 - -1.9
3,460,951 - -1.2
3,460,951 - -3.2
3,460,951 - -3.0
3,461,036 + Pf6N2E2_2971 0.12 -2.4
3,461,036 + Pf6N2E2_2971 0.12 -2.8
3,461,036 + Pf6N2E2_2971 0.12 -2.9
3,461,037 - Pf6N2E2_2971 0.12 -2.1
3,461,037 - Pf6N2E2_2971 0.12 -3.0
3,461,037 - Pf6N2E2_2971 0.12 -1.3
3,461,044 + Pf6N2E2_2971 0.12 -2.0
3,461,044 + Pf6N2E2_2971 0.12 -3.1
3,461,044 + Pf6N2E2_2971 0.12 -2.4
3,461,044 + Pf6N2E2_2971 0.12 -2.9
3,461,044 + Pf6N2E2_2971 0.12 -2.1
3,461,044 + Pf6N2E2_2971 0.12 -2.1
3,461,044 + Pf6N2E2_2971 0.12 -2.5
3,461,044 + Pf6N2E2_2971 0.12 -0.4
3,461,045 - Pf6N2E2_2971 0.12 -1.6
3,461,142 + Pf6N2E2_2971 0.19 -1.4
3,461,142 + Pf6N2E2_2971 0.19 -3.1
3,461,143 - Pf6N2E2_2971 0.19 -0.6
3,461,143 - Pf6N2E2_2971 0.19 -2.8

Or see this region's nucleotide sequence