Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2486

Experiment: Zinc chloride 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2484 and Pf6N2E2_2485 are separated by 258 nucleotidesPf6N2E2_2485 and Pf6N2E2_2486 are separated by 27 nucleotidesPf6N2E2_2486 and Pf6N2E2_2487 are separated by 348 nucleotides Pf6N2E2_2484 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,930,401 to 2,931,882 _2484 Pf6N2E2_2485 - Phage terminase, small subunit, at 2,932,141 to 2,932,515 _2485 Pf6N2E2_2486 - TesB-like acyl-CoA thioesterase 1, at 2,932,543 to 2,933,340 _2486 Pf6N2E2_2487 - FIG00956090: hypothetical protein, at 2,933,689 to 2,934,450 _2487 Position (kb) 2932 2933 2934Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2931.765 kb on + strandat 2931.765 kb on + strandat 2931.766 kb on - strandat 2931.880 kb on + strandat 2932.015 kb on + strandat 2932.015 kb on + strandat 2932.015 kb on + strandat 2932.015 kb on + strandat 2932.015 kb on + strandat 2932.015 kb on + strandat 2932.016 kb on - strandat 2932.044 kb on + strandat 2932.045 kb on - strandat 2932.055 kb on - strandat 2932.134 kb on + strandat 2932.134 kb on + strandat 2932.134 kb on + strandat 2932.134 kb on + strandat 2932.187 kb on - strand, within Pf6N2E2_2485at 2932.658 kb on + strand, within Pf6N2E2_2486at 2932.658 kb on + strand, within Pf6N2E2_2486at 2932.658 kb on + strand, within Pf6N2E2_2486at 2932.932 kb on + strand, within Pf6N2E2_2486at 2932.946 kb on + strand, within Pf6N2E2_2486at 2932.946 kb on + strand, within Pf6N2E2_2486at 2932.946 kb on + strand, within Pf6N2E2_2486at 2932.946 kb on + strand, within Pf6N2E2_2486at 2932.946 kb on + strand, within Pf6N2E2_2486at 2932.946 kb on + strand, within Pf6N2E2_2486at 2932.947 kb on - strand, within Pf6N2E2_2486at 2932.947 kb on - strand, within Pf6N2E2_2486at 2932.947 kb on - strand, within Pf6N2E2_2486at 2933.057 kb on - strand, within Pf6N2E2_2486at 2933.116 kb on + strand, within Pf6N2E2_2486at 2933.116 kb on + strand, within Pf6N2E2_2486at 2933.117 kb on - strand, within Pf6N2E2_2486at 2933.225 kb on + strand, within Pf6N2E2_2486at 2933.225 kb on + strand, within Pf6N2E2_2486at 2933.225 kb on + strand, within Pf6N2E2_2486at 2933.225 kb on + strand, within Pf6N2E2_2486at 2933.226 kb on - strandat 2933.467 kb on + strandat 2933.467 kb on + strandat 2933.468 kb on - strandat 2933.468 kb on - strandat 2933.468 kb on - strandat 2933.471 kb on - strandat 2933.471 kb on - strandat 2933.471 kb on - strandat 2933.471 kb on - strandat 2933.471 kb on - strandat 2933.482 kb on - strandat 2933.482 kb on - strandat 2933.482 kb on - strandat 2933.647 kb on + strandat 2934.146 kb on + strand, within Pf6N2E2_2487

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
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2,931,765 + -0.8
2,931,765 + -0.7
2,931,766 - -2.2
2,931,880 + +0.6
2,932,015 + +0.9
2,932,015 + -0.8
2,932,015 + -1.4
2,932,015 + -0.5
2,932,015 + +1.4
2,932,015 + -0.3
2,932,016 - -1.2
2,932,044 + +0.9
2,932,045 - +0.5
2,932,055 - -0.5
2,932,134 + -1.4
2,932,134 + -0.4
2,932,134 + -0.9
2,932,134 + +0.2
2,932,187 - Pf6N2E2_2485 0.12 -2.6
2,932,658 + Pf6N2E2_2486 0.14 -0.1
2,932,658 + Pf6N2E2_2486 0.14 +0.7
2,932,658 + Pf6N2E2_2486 0.14 +2.2
2,932,932 + Pf6N2E2_2486 0.49 +1.1
2,932,946 + Pf6N2E2_2486 0.51 -0.1
2,932,946 + Pf6N2E2_2486 0.51 -0.8
2,932,946 + Pf6N2E2_2486 0.51 +1.2
2,932,946 + Pf6N2E2_2486 0.51 +1.2
2,932,946 + Pf6N2E2_2486 0.51 +1.2
2,932,946 + Pf6N2E2_2486 0.51 +0.8
2,932,947 - Pf6N2E2_2486 0.51 -1.9
2,932,947 - Pf6N2E2_2486 0.51 -0.0
2,932,947 - Pf6N2E2_2486 0.51 +1.4
2,933,057 - Pf6N2E2_2486 0.64 -0.7
2,933,116 + Pf6N2E2_2486 0.72 +1.4
2,933,116 + Pf6N2E2_2486 0.72 -0.1
2,933,117 - Pf6N2E2_2486 0.72 -2.0
2,933,225 + Pf6N2E2_2486 0.85 +1.1
2,933,225 + Pf6N2E2_2486 0.85 -1.6
2,933,225 + Pf6N2E2_2486 0.85 +1.4
2,933,225 + Pf6N2E2_2486 0.85 -1.0
2,933,226 - +2.5
2,933,467 + -1.4
2,933,467 + -0.8
2,933,468 - +2.4
2,933,468 - -1.3
2,933,468 - +0.6
2,933,471 - +1.6
2,933,471 - -2.7
2,933,471 - +0.0
2,933,471 - -1.1
2,933,471 - -0.5
2,933,482 - +0.7
2,933,482 - +0.4
2,933,482 - +0.2
2,933,647 + -3.1
2,934,146 + Pf6N2E2_2487 0.60 -2.1

Or see this region's nucleotide sequence