Experiment: Zinc chloride 0.0000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2370 and Pf6N2E2_2371 overlap by 4 nucleotides Pf6N2E2_2371 and Pf6N2E2_2372 overlap by 4 nucleotides
Pf6N2E2_2370 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 2,803,616 to 2,805,673
_2370
Pf6N2E2_2371 - Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE), at 2,805,670 to 2,806,773
_2371
Pf6N2E2_2372 - Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG), at 2,806,770 to 2,808,425
_2372
Position (kb)
2805
2806
2807 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2804.729 kb on + strand, within Pf6N2E2_2370 at 2804.730 kb on - strand, within Pf6N2E2_2370 at 2804.980 kb on - strand, within Pf6N2E2_2370 at 2805.059 kb on - strand, within Pf6N2E2_2370 at 2805.059 kb on - strand, within Pf6N2E2_2370 at 2805.120 kb on + strand, within Pf6N2E2_2370 at 2805.121 kb on - strand, within Pf6N2E2_2370 at 2805.499 kb on - strand at 2805.499 kb on - strand at 2805.717 kb on - strand at 2805.908 kb on + strand, within Pf6N2E2_2371 at 2806.119 kb on + strand, within Pf6N2E2_2371 at 2806.120 kb on - strand, within Pf6N2E2_2371 at 2806.792 kb on + strand at 2806.792 kb on + strand at 2806.830 kb on + strand at 2806.830 kb on + strand at 2806.830 kb on + strand at 2806.831 kb on - strand at 2806.831 kb on - strand at 2807.061 kb on - strand, within Pf6N2E2_2372 at 2807.190 kb on + strand, within Pf6N2E2_2372 at 2807.190 kb on + strand, within Pf6N2E2_2372 at 2807.191 kb on - strand, within Pf6N2E2_2372 at 2807.191 kb on - strand, within Pf6N2E2_2372 at 2807.209 kb on + strand, within Pf6N2E2_2372 at 2807.209 kb on + strand, within Pf6N2E2_2372 at 2807.210 kb on - strand, within Pf6N2E2_2372 at 2807.257 kb on + strand, within Pf6N2E2_2372 at 2807.258 kb on - strand, within Pf6N2E2_2372 at 2807.258 kb on - strand, within Pf6N2E2_2372 at 2807.258 kb on - strand, within Pf6N2E2_2372 at 2807.258 kb on - strand, within Pf6N2E2_2372 at 2807.258 kb on - strand, within Pf6N2E2_2372 at 2807.258 kb on - strand, within Pf6N2E2_2372 at 2807.258 kb on - strand, within Pf6N2E2_2372 at 2807.258 kb on - strand, within Pf6N2E2_2372
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M remove 2,804,729 + Pf6N2E2_2370 0.54 +0.3 2,804,730 - Pf6N2E2_2370 0.54 +0.3 2,804,980 - Pf6N2E2_2370 0.66 -0.1 2,805,059 - Pf6N2E2_2370 0.70 -0.0 2,805,059 - Pf6N2E2_2370 0.70 +0.9 2,805,120 + Pf6N2E2_2370 0.73 +1.2 2,805,121 - Pf6N2E2_2370 0.73 -2.6 2,805,499 - -0.6 2,805,499 - -1.6 2,805,717 - -1.1 2,805,908 + Pf6N2E2_2371 0.22 -3.4 2,806,119 + Pf6N2E2_2371 0.41 +0.3 2,806,120 - Pf6N2E2_2371 0.41 -1.3 2,806,792 + +0.9 2,806,792 + -0.7 2,806,830 + -0.0 2,806,830 + +0.6 2,806,830 + -0.4 2,806,831 - +1.8 2,806,831 - -0.2 2,807,061 - Pf6N2E2_2372 0.18 +0.1 2,807,190 + Pf6N2E2_2372 0.25 -2.3 2,807,190 + Pf6N2E2_2372 0.25 -0.2 2,807,191 - Pf6N2E2_2372 0.25 -0.6 2,807,191 - Pf6N2E2_2372 0.25 -0.5 2,807,209 + Pf6N2E2_2372 0.27 -0.4 2,807,209 + Pf6N2E2_2372 0.27 -0.1 2,807,210 - Pf6N2E2_2372 0.27 +0.0 2,807,257 + Pf6N2E2_2372 0.29 -2.4 2,807,258 - Pf6N2E2_2372 0.29 -0.7 2,807,258 - Pf6N2E2_2372 0.29 +0.3 2,807,258 - Pf6N2E2_2372 0.29 +0.1 2,807,258 - Pf6N2E2_2372 0.29 -2.9 2,807,258 - Pf6N2E2_2372 0.29 -2.6 2,807,258 - Pf6N2E2_2372 0.29 -0.3 2,807,258 - Pf6N2E2_2372 0.29 -1.3 2,807,258 - Pf6N2E2_2372 0.29 -1.8
Or see this region's nucleotide sequence