Experiment: Zinc chloride 0.0000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2246 and Pf6N2E2_2247 are separated by 502 nucleotides Pf6N2E2_2247 and Pf6N2E2_2248 are separated by 143 nucleotides
Pf6N2E2_2246 - Arabinose efflux permease, at 2,659,091 to 2,660,308
_2246
Pf6N2E2_2247 - Transcriptional regulator, AraC family, at 2,660,811 to 2,661,587
_2247
Pf6N2E2_2248 - Aspartate racemase, at 2,661,731 to 2,663,245
_2248
Position (kb)
2660
2661
2662 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2660.004 kb on + strand, within Pf6N2E2_2246 at 2660.261 kb on + strand at 2660.262 kb on - strand at 2660.325 kb on - strand at 2660.325 kb on - strand at 2660.430 kb on + strand at 2660.431 kb on - strand at 2660.516 kb on + strand at 2660.517 kb on - strand at 2660.554 kb on - strand at 2660.578 kb on - strand at 2660.578 kb on - strand at 2660.578 kb on - strand at 2660.597 kb on - strand at 2660.598 kb on + strand at 2660.599 kb on - strand at 2660.614 kb on + strand at 2660.615 kb on - strand at 2660.622 kb on + strand at 2660.622 kb on + strand at 2660.622 kb on + strand at 2660.634 kb on + strand at 2660.692 kb on + strand at 2660.877 kb on + strand at 2660.878 kb on - strand at 2660.878 kb on - strand at 2661.285 kb on + strand, within Pf6N2E2_2247 at 2661.286 kb on - strand, within Pf6N2E2_2247 at 2661.286 kb on - strand, within Pf6N2E2_2247 at 2661.477 kb on + strand, within Pf6N2E2_2247 at 2661.508 kb on - strand, within Pf6N2E2_2247 at 2661.589 kb on - strand at 2661.589 kb on - strand at 2661.657 kb on - strand at 2662.015 kb on - strand, within Pf6N2E2_2248 at 2662.015 kb on - strand, within Pf6N2E2_2248 at 2662.015 kb on - strand, within Pf6N2E2_2248 at 2662.095 kb on + strand, within Pf6N2E2_2248 at 2662.096 kb on - strand, within Pf6N2E2_2248 at 2662.096 kb on - strand, within Pf6N2E2_2248 at 2662.115 kb on - strand, within Pf6N2E2_2248 at 2662.155 kb on + strand, within Pf6N2E2_2248 at 2662.155 kb on + strand, within Pf6N2E2_2248 at 2662.155 kb on + strand, within Pf6N2E2_2248 at 2662.156 kb on - strand, within Pf6N2E2_2248 at 2662.156 kb on - strand, within Pf6N2E2_2248 at 2662.156 kb on - strand, within Pf6N2E2_2248 at 2662.156 kb on - strand, within Pf6N2E2_2248 at 2662.156 kb on - strand, within Pf6N2E2_2248 at 2662.156 kb on - strand, within Pf6N2E2_2248 at 2662.156 kb on - strand, within Pf6N2E2_2248 at 2662.308 kb on + strand, within Pf6N2E2_2248 at 2662.308 kb on + strand, within Pf6N2E2_2248 at 2662.308 kb on + strand, within Pf6N2E2_2248 at 2662.308 kb on + strand, within Pf6N2E2_2248 at 2662.308 kb on + strand, within Pf6N2E2_2248 at 2662.308 kb on + strand, within Pf6N2E2_2248 at 2662.308 kb on + strand, within Pf6N2E2_2248 at 2662.308 kb on + strand, within Pf6N2E2_2248 at 2662.308 kb on + strand, within Pf6N2E2_2248 at 2662.309 kb on - strand, within Pf6N2E2_2248 at 2662.309 kb on - strand, within Pf6N2E2_2248 at 2662.309 kb on - strand, within Pf6N2E2_2248 at 2662.309 kb on - strand, within Pf6N2E2_2248 at 2662.309 kb on - strand, within Pf6N2E2_2248 at 2662.309 kb on - strand, within Pf6N2E2_2248 at 2662.309 kb on - strand, within Pf6N2E2_2248 at 2662.365 kb on - strand, within Pf6N2E2_2248 at 2662.540 kb on - strand, within Pf6N2E2_2248
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M remove 2,660,004 + Pf6N2E2_2246 0.75 +0.6 2,660,261 + +0.5 2,660,262 - -0.2 2,660,325 - +1.2 2,660,325 - -0.0 2,660,430 + +1.3 2,660,431 - +0.8 2,660,516 + -0.6 2,660,517 - +0.4 2,660,554 - +1.3 2,660,578 - -0.2 2,660,578 - +2.0 2,660,578 - -0.6 2,660,597 - +0.9 2,660,598 + +1.9 2,660,599 - -0.5 2,660,614 + +0.7 2,660,615 - +0.0 2,660,622 + +1.3 2,660,622 + +0.4 2,660,622 + -1.5 2,660,634 + +0.5 2,660,692 + +1.2 2,660,877 + +2.7 2,660,878 - +0.2 2,660,878 - -0.5 2,661,285 + Pf6N2E2_2247 0.61 -1.3 2,661,286 - Pf6N2E2_2247 0.61 -0.3 2,661,286 - Pf6N2E2_2247 0.61 -0.9 2,661,477 + Pf6N2E2_2247 0.86 -2.3 2,661,508 - Pf6N2E2_2247 0.90 -1.1 2,661,589 - -0.4 2,661,589 - -1.8 2,661,657 - +1.3 2,662,015 - Pf6N2E2_2248 0.19 +0.4 2,662,015 - Pf6N2E2_2248 0.19 -3.2 2,662,015 - Pf6N2E2_2248 0.19 +2.0 2,662,095 + Pf6N2E2_2248 0.24 +0.3 2,662,096 - Pf6N2E2_2248 0.24 -0.3 2,662,096 - Pf6N2E2_2248 0.24 +1.7 2,662,115 - Pf6N2E2_2248 0.25 -0.9 2,662,155 + Pf6N2E2_2248 0.28 -1.0 2,662,155 + Pf6N2E2_2248 0.28 +2.6 2,662,155 + Pf6N2E2_2248 0.28 +2.2 2,662,156 - Pf6N2E2_2248 0.28 -2.4 2,662,156 - Pf6N2E2_2248 0.28 -1.7 2,662,156 - Pf6N2E2_2248 0.28 +0.5 2,662,156 - Pf6N2E2_2248 0.28 -0.7 2,662,156 - Pf6N2E2_2248 0.28 +0.1 2,662,156 - Pf6N2E2_2248 0.28 -0.4 2,662,156 - Pf6N2E2_2248 0.28 -1.2 2,662,308 + Pf6N2E2_2248 0.38 -0.9 2,662,308 + Pf6N2E2_2248 0.38 +0.9 2,662,308 + Pf6N2E2_2248 0.38 -1.6 2,662,308 + Pf6N2E2_2248 0.38 +0.8 2,662,308 + Pf6N2E2_2248 0.38 +0.1 2,662,308 + Pf6N2E2_2248 0.38 +1.2 2,662,308 + Pf6N2E2_2248 0.38 +0.6 2,662,308 + Pf6N2E2_2248 0.38 +0.4 2,662,308 + Pf6N2E2_2248 0.38 -1.2 2,662,309 - Pf6N2E2_2248 0.38 -3.9 2,662,309 - Pf6N2E2_2248 0.38 -2.3 2,662,309 - Pf6N2E2_2248 0.38 +1.5 2,662,309 - Pf6N2E2_2248 0.38 +1.1 2,662,309 - Pf6N2E2_2248 0.38 +0.7 2,662,309 - Pf6N2E2_2248 0.38 -1.0 2,662,309 - Pf6N2E2_2248 0.38 -0.2 2,662,365 - Pf6N2E2_2248 0.42 +0.5 2,662,540 - Pf6N2E2_2248 0.53 +1.3
Or see this region's nucleotide sequence