Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2247

Experiment: Zinc chloride 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2246 and Pf6N2E2_2247 are separated by 502 nucleotidesPf6N2E2_2247 and Pf6N2E2_2248 are separated by 143 nucleotides Pf6N2E2_2246 - Arabinose efflux permease, at 2,659,091 to 2,660,308 _2246 Pf6N2E2_2247 - Transcriptional regulator, AraC family, at 2,660,811 to 2,661,587 _2247 Pf6N2E2_2248 - Aspartate racemase, at 2,661,731 to 2,663,245 _2248 Position (kb) 2660 2661 2662Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2660.004 kb on + strand, within Pf6N2E2_2246at 2660.261 kb on + strandat 2660.262 kb on - strandat 2660.325 kb on - strandat 2660.325 kb on - strandat 2660.430 kb on + strandat 2660.431 kb on - strandat 2660.516 kb on + strandat 2660.517 kb on - strandat 2660.554 kb on - strandat 2660.578 kb on - strandat 2660.578 kb on - strandat 2660.578 kb on - strandat 2660.597 kb on - strandat 2660.598 kb on + strandat 2660.599 kb on - strandat 2660.614 kb on + strandat 2660.615 kb on - strandat 2660.622 kb on + strandat 2660.622 kb on + strandat 2660.622 kb on + strandat 2660.634 kb on + strandat 2660.692 kb on + strandat 2660.877 kb on + strandat 2660.878 kb on - strandat 2660.878 kb on - strandat 2661.285 kb on + strand, within Pf6N2E2_2247at 2661.286 kb on - strand, within Pf6N2E2_2247at 2661.286 kb on - strand, within Pf6N2E2_2247at 2661.477 kb on + strand, within Pf6N2E2_2247at 2661.508 kb on - strand, within Pf6N2E2_2247at 2661.589 kb on - strandat 2661.589 kb on - strandat 2661.657 kb on - strandat 2662.015 kb on - strand, within Pf6N2E2_2248at 2662.015 kb on - strand, within Pf6N2E2_2248at 2662.015 kb on - strand, within Pf6N2E2_2248at 2662.095 kb on + strand, within Pf6N2E2_2248at 2662.096 kb on - strand, within Pf6N2E2_2248at 2662.096 kb on - strand, within Pf6N2E2_2248at 2662.115 kb on - strand, within Pf6N2E2_2248at 2662.155 kb on + strand, within Pf6N2E2_2248at 2662.155 kb on + strand, within Pf6N2E2_2248at 2662.155 kb on + strand, within Pf6N2E2_2248at 2662.156 kb on - strand, within Pf6N2E2_2248at 2662.156 kb on - strand, within Pf6N2E2_2248at 2662.156 kb on - strand, within Pf6N2E2_2248at 2662.156 kb on - strand, within Pf6N2E2_2248at 2662.156 kb on - strand, within Pf6N2E2_2248at 2662.156 kb on - strand, within Pf6N2E2_2248at 2662.156 kb on - strand, within Pf6N2E2_2248at 2662.308 kb on + strand, within Pf6N2E2_2248at 2662.308 kb on + strand, within Pf6N2E2_2248at 2662.308 kb on + strand, within Pf6N2E2_2248at 2662.308 kb on + strand, within Pf6N2E2_2248at 2662.308 kb on + strand, within Pf6N2E2_2248at 2662.308 kb on + strand, within Pf6N2E2_2248at 2662.308 kb on + strand, within Pf6N2E2_2248at 2662.308 kb on + strand, within Pf6N2E2_2248at 2662.308 kb on + strand, within Pf6N2E2_2248at 2662.309 kb on - strand, within Pf6N2E2_2248at 2662.309 kb on - strand, within Pf6N2E2_2248at 2662.309 kb on - strand, within Pf6N2E2_2248at 2662.309 kb on - strand, within Pf6N2E2_2248at 2662.309 kb on - strand, within Pf6N2E2_2248at 2662.309 kb on - strand, within Pf6N2E2_2248at 2662.309 kb on - strand, within Pf6N2E2_2248at 2662.365 kb on - strand, within Pf6N2E2_2248at 2662.540 kb on - strand, within Pf6N2E2_2248

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
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2,660,004 + Pf6N2E2_2246 0.75 +0.6
2,660,261 + +0.5
2,660,262 - -0.2
2,660,325 - +1.2
2,660,325 - -0.0
2,660,430 + +1.3
2,660,431 - +0.8
2,660,516 + -0.6
2,660,517 - +0.4
2,660,554 - +1.3
2,660,578 - -0.2
2,660,578 - +2.0
2,660,578 - -0.6
2,660,597 - +0.9
2,660,598 + +1.9
2,660,599 - -0.5
2,660,614 + +0.7
2,660,615 - +0.0
2,660,622 + +1.3
2,660,622 + +0.4
2,660,622 + -1.5
2,660,634 + +0.5
2,660,692 + +1.2
2,660,877 + +2.7
2,660,878 - +0.2
2,660,878 - -0.5
2,661,285 + Pf6N2E2_2247 0.61 -1.3
2,661,286 - Pf6N2E2_2247 0.61 -0.3
2,661,286 - Pf6N2E2_2247 0.61 -0.9
2,661,477 + Pf6N2E2_2247 0.86 -2.3
2,661,508 - Pf6N2E2_2247 0.90 -1.1
2,661,589 - -0.4
2,661,589 - -1.8
2,661,657 - +1.3
2,662,015 - Pf6N2E2_2248 0.19 +0.4
2,662,015 - Pf6N2E2_2248 0.19 -3.2
2,662,015 - Pf6N2E2_2248 0.19 +2.0
2,662,095 + Pf6N2E2_2248 0.24 +0.3
2,662,096 - Pf6N2E2_2248 0.24 -0.3
2,662,096 - Pf6N2E2_2248 0.24 +1.7
2,662,115 - Pf6N2E2_2248 0.25 -0.9
2,662,155 + Pf6N2E2_2248 0.28 -1.0
2,662,155 + Pf6N2E2_2248 0.28 +2.6
2,662,155 + Pf6N2E2_2248 0.28 +2.2
2,662,156 - Pf6N2E2_2248 0.28 -2.4
2,662,156 - Pf6N2E2_2248 0.28 -1.7
2,662,156 - Pf6N2E2_2248 0.28 +0.5
2,662,156 - Pf6N2E2_2248 0.28 -0.7
2,662,156 - Pf6N2E2_2248 0.28 +0.1
2,662,156 - Pf6N2E2_2248 0.28 -0.4
2,662,156 - Pf6N2E2_2248 0.28 -1.2
2,662,308 + Pf6N2E2_2248 0.38 -0.9
2,662,308 + Pf6N2E2_2248 0.38 +0.9
2,662,308 + Pf6N2E2_2248 0.38 -1.6
2,662,308 + Pf6N2E2_2248 0.38 +0.8
2,662,308 + Pf6N2E2_2248 0.38 +0.1
2,662,308 + Pf6N2E2_2248 0.38 +1.2
2,662,308 + Pf6N2E2_2248 0.38 +0.6
2,662,308 + Pf6N2E2_2248 0.38 +0.4
2,662,308 + Pf6N2E2_2248 0.38 -1.2
2,662,309 - Pf6N2E2_2248 0.38 -3.9
2,662,309 - Pf6N2E2_2248 0.38 -2.3
2,662,309 - Pf6N2E2_2248 0.38 +1.5
2,662,309 - Pf6N2E2_2248 0.38 +1.1
2,662,309 - Pf6N2E2_2248 0.38 +0.7
2,662,309 - Pf6N2E2_2248 0.38 -1.0
2,662,309 - Pf6N2E2_2248 0.38 -0.2
2,662,365 - Pf6N2E2_2248 0.42 +0.5
2,662,540 - Pf6N2E2_2248 0.53 +1.3

Or see this region's nucleotide sequence