Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1958

Experiment: Zinc chloride 0.0000015625 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1957 and Pf6N2E2_1958 are separated by 170 nucleotidesPf6N2E2_1958 and Pf6N2E2_1959 are separated by 188 nucleotides Pf6N2E2_1957 - putative inner membrane protein, at 2,321,749 to 2,323,065 _1957 Pf6N2E2_1958 - Predicted dinucleotide-binding enzymes, at 2,323,236 to 2,323,778 _1958 Pf6N2E2_1959 - D-sorbitol dehydrogenase (EC 1.1.1.14) (from data), at 2,323,967 to 2,324,740 _1959 Position (kb) 2323 2324Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2322.344 kb on + strand, within Pf6N2E2_1957at 2322.451 kb on + strand, within Pf6N2E2_1957at 2322.484 kb on + strand, within Pf6N2E2_1957at 2322.508 kb on + strand, within Pf6N2E2_1957at 2322.508 kb on + strand, within Pf6N2E2_1957at 2322.611 kb on + strand, within Pf6N2E2_1957at 2322.807 kb on + strand, within Pf6N2E2_1957at 2322.966 kb on + strandat 2322.966 kb on + strandat 2322.967 kb on - strandat 2322.967 kb on - strandat 2322.967 kb on - strandat 2323.029 kb on + strandat 2323.071 kb on - strandat 2323.201 kb on + strandat 2323.201 kb on + strandat 2323.202 kb on - strandat 2323.202 kb on - strandat 2323.459 kb on + strand, within Pf6N2E2_1958at 2323.459 kb on + strand, within Pf6N2E2_1958at 2323.459 kb on + strand, within Pf6N2E2_1958at 2323.459 kb on + strand, within Pf6N2E2_1958at 2323.462 kb on - strand, within Pf6N2E2_1958at 2323.507 kb on - strand, within Pf6N2E2_1958at 2323.777 kb on - strandat 2323.777 kb on - strandat 2323.800 kb on + strandat 2323.804 kb on + strandat 2323.805 kb on - strandat 2323.805 kb on - strandat 2323.805 kb on - strandat 2323.824 kb on + strandat 2323.999 kb on - strandat 2324.016 kb on + strandat 2324.123 kb on + strand, within Pf6N2E2_1959at 2324.251 kb on + strand, within Pf6N2E2_1959at 2324.578 kb on - strand, within Pf6N2E2_1959at 2324.637 kb on - strand, within Pf6N2E2_1959at 2324.664 kb on + strandat 2324.664 kb on + strandat 2324.664 kb on + strandat 2324.665 kb on - strandat 2324.665 kb on - strandat 2324.665 kb on - strandat 2324.665 kb on - strandat 2324.722 kb on + strandat 2324.748 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
remove
2,322,344 + Pf6N2E2_1957 0.45 -1.0
2,322,451 + Pf6N2E2_1957 0.53 +0.3
2,322,484 + Pf6N2E2_1957 0.56 +0.4
2,322,508 + Pf6N2E2_1957 0.58 +1.1
2,322,508 + Pf6N2E2_1957 0.58 -1.0
2,322,611 + Pf6N2E2_1957 0.65 -0.1
2,322,807 + Pf6N2E2_1957 0.80 +0.5
2,322,966 + -2.0
2,322,966 + +1.4
2,322,967 - +0.2
2,322,967 - +2.6
2,322,967 - +2.4
2,323,029 + -0.0
2,323,071 - +1.2
2,323,201 + -1.5
2,323,201 + +0.4
2,323,202 - +0.2
2,323,202 - -2.7
2,323,459 + Pf6N2E2_1958 0.41 +2.0
2,323,459 + Pf6N2E2_1958 0.41 -2.6
2,323,459 + Pf6N2E2_1958 0.41 +1.6
2,323,459 + Pf6N2E2_1958 0.41 +1.3
2,323,462 - Pf6N2E2_1958 0.42 +1.6
2,323,507 - Pf6N2E2_1958 0.50 -3.5
2,323,777 - +2.0
2,323,777 - -0.9
2,323,800 + -0.2
2,323,804 + +2.1
2,323,805 - +1.8
2,323,805 - -0.0
2,323,805 - -2.2
2,323,824 + -0.5
2,323,999 - +0.2
2,324,016 + +0.8
2,324,123 + Pf6N2E2_1959 0.20 +0.6
2,324,251 + Pf6N2E2_1959 0.37 +0.4
2,324,578 - Pf6N2E2_1959 0.79 -0.7
2,324,637 - Pf6N2E2_1959 0.87 -3.3
2,324,664 + -0.5
2,324,664 + -0.9
2,324,664 + +0.8
2,324,665 - -0.8
2,324,665 - +0.5
2,324,665 - +1.3
2,324,665 - +1.8
2,324,722 + +0.4
2,324,748 - -0.5

Or see this region's nucleotide sequence