Experiment: Zinc chloride 0.0000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1925 and Pf6N2E2_1926 overlap by 4 nucleotides Pf6N2E2_1926 and Pf6N2E2_1927 are separated by 421 nucleotides Pf6N2E2_1927 and Pf6N2E2_1928 are separated by 3 nucleotides Pf6N2E2_1928 and Pf6N2E2_1929 are separated by 112 nucleotides
Pf6N2E2_1925 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,280,238 to 2,280,876
_1925
Pf6N2E2_1926 - hypothetical protein, at 2,280,873 to 2,281,016
_1926
Pf6N2E2_1927 - Capsule biosynthesis protein capA, at 2,281,438 to 2,282,553
_1927
Pf6N2E2_1928 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,282,557 to 2,283,333
_1928
Pf6N2E2_1929 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 2,283,446 to 2,284,780
_1929
Position (kb)
2281
2282
2283 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2280.488 kb on + strand, within Pf6N2E2_1925 at 2280.489 kb on - strand, within Pf6N2E2_1925 at 2280.544 kb on - strand, within Pf6N2E2_1925 at 2280.551 kb on + strand, within Pf6N2E2_1925 at 2280.551 kb on + strand, within Pf6N2E2_1925 at 2280.551 kb on + strand, within Pf6N2E2_1925 at 2280.552 kb on - strand, within Pf6N2E2_1925 at 2280.560 kb on + strand, within Pf6N2E2_1925 at 2280.561 kb on - strand, within Pf6N2E2_1925 at 2280.566 kb on + strand, within Pf6N2E2_1925 at 2280.566 kb on + strand, within Pf6N2E2_1925 at 2280.567 kb on - strand, within Pf6N2E2_1925 at 2280.570 kb on + strand, within Pf6N2E2_1925 at 2280.634 kb on + strand, within Pf6N2E2_1925 at 2280.634 kb on + strand, within Pf6N2E2_1925 at 2280.645 kb on + strand, within Pf6N2E2_1925 at 2281.006 kb on - strand at 2281.046 kb on + strand at 2281.135 kb on - strand at 2281.329 kb on + strand at 2281.428 kb on - strand at 2281.457 kb on + strand at 2281.520 kb on - strand at 2281.520 kb on - strand at 2281.585 kb on + strand, within Pf6N2E2_1927 at 2281.585 kb on + strand, within Pf6N2E2_1927 at 2281.702 kb on + strand, within Pf6N2E2_1927 at 2281.703 kb on - strand, within Pf6N2E2_1927 at 2281.703 kb on - strand, within Pf6N2E2_1927 at 2281.703 kb on - strand, within Pf6N2E2_1927 at 2281.840 kb on + strand, within Pf6N2E2_1927 at 2281.840 kb on + strand, within Pf6N2E2_1927 at 2281.841 kb on - strand, within Pf6N2E2_1927 at 2281.841 kb on - strand, within Pf6N2E2_1927 at 2281.843 kb on - strand, within Pf6N2E2_1927 at 2281.843 kb on - strand, within Pf6N2E2_1927 at 2281.851 kb on + strand, within Pf6N2E2_1927 at 2281.927 kb on + strand, within Pf6N2E2_1927 at 2281.927 kb on + strand, within Pf6N2E2_1927 at 2281.928 kb on - strand, within Pf6N2E2_1927 at 2282.030 kb on + strand, within Pf6N2E2_1927 at 2282.031 kb on - strand, within Pf6N2E2_1927 at 2282.136 kb on + strand, within Pf6N2E2_1927 at 2282.137 kb on - strand, within Pf6N2E2_1927 at 2282.183 kb on - strand, within Pf6N2E2_1927 at 2282.183 kb on - strand, within Pf6N2E2_1927 at 2282.183 kb on - strand, within Pf6N2E2_1927 at 2282.183 kb on - strand, within Pf6N2E2_1927 at 2282.184 kb on + strand, within Pf6N2E2_1927 at 2282.203 kb on + strand, within Pf6N2E2_1927 at 2282.204 kb on - strand, within Pf6N2E2_1927 at 2282.340 kb on + strand, within Pf6N2E2_1927 at 2282.340 kb on + strand, within Pf6N2E2_1927 at 2282.341 kb on - strand, within Pf6N2E2_1927 at 2282.341 kb on - strand, within Pf6N2E2_1927 at 2282.613 kb on - strand at 2282.771 kb on + strand, within Pf6N2E2_1928 at 2282.772 kb on - strand, within Pf6N2E2_1928 at 2282.772 kb on - strand, within Pf6N2E2_1928 at 2282.772 kb on - strand, within Pf6N2E2_1928 at 2282.799 kb on + strand, within Pf6N2E2_1928 at 2282.800 kb on - strand, within Pf6N2E2_1928 at 2283.028 kb on - strand, within Pf6N2E2_1928 at 2283.028 kb on - strand, within Pf6N2E2_1928 at 2283.028 kb on - strand, within Pf6N2E2_1928 at 2283.065 kb on - strand, within Pf6N2E2_1928 at 2283.065 kb on - strand, within Pf6N2E2_1928 at 2283.065 kb on - strand, within Pf6N2E2_1928 at 2283.167 kb on - strand, within Pf6N2E2_1928 at 2283.202 kb on - strand, within Pf6N2E2_1928 at 2283.202 kb on - strand, within Pf6N2E2_1928 at 2283.202 kb on - strand, within Pf6N2E2_1928 at 2283.331 kb on + strand at 2283.345 kb on + strand at 2283.346 kb on - strand at 2283.373 kb on + strand at 2283.380 kb on - strand at 2283.398 kb on + strand at 2283.400 kb on + strand at 2283.400 kb on + strand at 2283.400 kb on + strand at 2283.400 kb on + strand at 2283.400 kb on + strand at 2283.400 kb on + strand at 2283.401 kb on - strand at 2283.401 kb on - strand at 2283.401 kb on - strand at 2283.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M remove 2,280,488 + Pf6N2E2_1925 0.39 +0.3 2,280,489 - Pf6N2E2_1925 0.39 +0.8 2,280,544 - Pf6N2E2_1925 0.48 -1.0 2,280,551 + Pf6N2E2_1925 0.49 -1.5 2,280,551 + Pf6N2E2_1925 0.49 +1.5 2,280,551 + Pf6N2E2_1925 0.49 +0.8 2,280,552 - Pf6N2E2_1925 0.49 +0.2 2,280,560 + Pf6N2E2_1925 0.50 -0.5 2,280,561 - Pf6N2E2_1925 0.51 +0.8 2,280,566 + Pf6N2E2_1925 0.51 +1.5 2,280,566 + Pf6N2E2_1925 0.51 +0.2 2,280,567 - Pf6N2E2_1925 0.51 -1.6 2,280,570 + Pf6N2E2_1925 0.52 +0.8 2,280,634 + Pf6N2E2_1925 0.62 +0.6 2,280,634 + Pf6N2E2_1925 0.62 -0.9 2,280,645 + Pf6N2E2_1925 0.64 +1.5 2,281,006 - -1.9 2,281,046 + -1.7 2,281,135 - +1.5 2,281,329 + -1.8 2,281,428 - -2.5 2,281,457 + +1.1 2,281,520 - -2.0 2,281,520 - +1.8 2,281,585 + Pf6N2E2_1927 0.13 +1.5 2,281,585 + Pf6N2E2_1927 0.13 -0.2 2,281,702 + Pf6N2E2_1927 0.24 +2.3 2,281,703 - Pf6N2E2_1927 0.24 -0.9 2,281,703 - Pf6N2E2_1927 0.24 +0.2 2,281,703 - Pf6N2E2_1927 0.24 +1.3 2,281,840 + Pf6N2E2_1927 0.36 -0.3 2,281,840 + Pf6N2E2_1927 0.36 +0.6 2,281,841 - Pf6N2E2_1927 0.36 +1.2 2,281,841 - Pf6N2E2_1927 0.36 -0.4 2,281,843 - Pf6N2E2_1927 0.36 -0.3 2,281,843 - Pf6N2E2_1927 0.36 +0.9 2,281,851 + Pf6N2E2_1927 0.37 +2.1 2,281,927 + Pf6N2E2_1927 0.44 -2.4 2,281,927 + Pf6N2E2_1927 0.44 -1.5 2,281,928 - Pf6N2E2_1927 0.44 +0.7 2,282,030 + Pf6N2E2_1927 0.53 -0.1 2,282,031 - Pf6N2E2_1927 0.53 -1.2 2,282,136 + Pf6N2E2_1927 0.63 -2.0 2,282,137 - Pf6N2E2_1927 0.63 +0.3 2,282,183 - Pf6N2E2_1927 0.67 +0.1 2,282,183 - Pf6N2E2_1927 0.67 -1.6 2,282,183 - Pf6N2E2_1927 0.67 +3.1 2,282,183 - Pf6N2E2_1927 0.67 +1.3 2,282,184 + Pf6N2E2_1927 0.67 +1.4 2,282,203 + Pf6N2E2_1927 0.69 +1.3 2,282,204 - Pf6N2E2_1927 0.69 -1.2 2,282,340 + Pf6N2E2_1927 0.81 +1.8 2,282,340 + Pf6N2E2_1927 0.81 +1.0 2,282,341 - Pf6N2E2_1927 0.81 +0.5 2,282,341 - Pf6N2E2_1927 0.81 +0.0 2,282,613 - +0.3 2,282,771 + Pf6N2E2_1928 0.28 +1.0 2,282,772 - Pf6N2E2_1928 0.28 -1.4 2,282,772 - Pf6N2E2_1928 0.28 -0.7 2,282,772 - Pf6N2E2_1928 0.28 -1.4 2,282,799 + Pf6N2E2_1928 0.31 +0.0 2,282,800 - Pf6N2E2_1928 0.31 +0.4 2,283,028 - Pf6N2E2_1928 0.61 -0.1 2,283,028 - Pf6N2E2_1928 0.61 -0.2 2,283,028 - Pf6N2E2_1928 0.61 -1.4 2,283,065 - Pf6N2E2_1928 0.65 +0.6 2,283,065 - Pf6N2E2_1928 0.65 +1.7 2,283,065 - Pf6N2E2_1928 0.65 -1.1 2,283,167 - Pf6N2E2_1928 0.79 -0.9 2,283,202 - Pf6N2E2_1928 0.83 -1.6 2,283,202 - Pf6N2E2_1928 0.83 +0.5 2,283,202 - Pf6N2E2_1928 0.83 +1.9 2,283,331 + +0.3 2,283,345 + -2.4 2,283,346 - -2.5 2,283,373 + +0.3 2,283,380 - -1.9 2,283,398 + +0.1 2,283,400 + -2.2 2,283,400 + +1.5 2,283,400 + +0.8 2,283,400 + +0.7 2,283,400 + -1.6 2,283,400 + -0.3 2,283,401 - -0.0 2,283,401 - -0.3 2,283,401 - -1.9 2,283,401 - +1.0
Or see this region's nucleotide sequence