Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1567

Experiment: Zinc chloride 0.0000015625 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1565 and Pf6N2E2_1566 overlap by 4 nucleotidesPf6N2E2_1566 and Pf6N2E2_1567 are separated by 39 nucleotidesPf6N2E2_1567 and Pf6N2E2_1568 overlap by 4 nucleotides Pf6N2E2_1565 - FIG00961164: hypothetical protein, at 1,827,610 to 1,828,500 _1565 Pf6N2E2_1566 - FIG00960770: hypothetical protein, at 1,828,497 to 1,829,270 _1566 Pf6N2E2_1567 - FIG00964846: hypothetical protein, at 1,829,310 to 1,830,194 _1567 Pf6N2E2_1568 - FIG00960890: hypothetical protein, at 1,830,191 to 1,831,420 _1568 Position (kb) 1829 1830 1831Strain fitness (log2 ratio) -2 -1 0 1 2at 1828.315 kb on + strand, within Pf6N2E2_1565at 1828.316 kb on - strand, within Pf6N2E2_1565at 1828.363 kb on - strand, within Pf6N2E2_1565at 1828.363 kb on - strand, within Pf6N2E2_1565at 1828.442 kb on + strandat 1828.442 kb on + strandat 1828.512 kb on - strandat 1828.816 kb on + strand, within Pf6N2E2_1566at 1828.816 kb on + strand, within Pf6N2E2_1566at 1828.816 kb on + strand, within Pf6N2E2_1566at 1828.817 kb on - strand, within Pf6N2E2_1566at 1829.038 kb on + strand, within Pf6N2E2_1566at 1829.038 kb on + strand, within Pf6N2E2_1566at 1829.225 kb on - strandat 1829.319 kb on + strandat 1829.457 kb on + strand, within Pf6N2E2_1567at 1829.457 kb on + strand, within Pf6N2E2_1567at 1829.457 kb on + strand, within Pf6N2E2_1567at 1829.457 kb on + strand, within Pf6N2E2_1567at 1829.743 kb on + strand, within Pf6N2E2_1567at 1829.743 kb on + strand, within Pf6N2E2_1567at 1829.743 kb on + strand, within Pf6N2E2_1567at 1829.744 kb on - strand, within Pf6N2E2_1567at 1829.744 kb on - strand, within Pf6N2E2_1567at 1829.744 kb on - strand, within Pf6N2E2_1567at 1830.231 kb on - strandat 1830.494 kb on + strand, within Pf6N2E2_1568at 1830.495 kb on - strand, within Pf6N2E2_1568at 1830.495 kb on - strand, within Pf6N2E2_1568at 1830.531 kb on - strand, within Pf6N2E2_1568at 1830.531 kb on - strand, within Pf6N2E2_1568at 1830.873 kb on - strand, within Pf6N2E2_1568at 1830.873 kb on - strand, within Pf6N2E2_1568at 1830.873 kb on - strand, within Pf6N2E2_1568at 1831.016 kb on + strand, within Pf6N2E2_1568at 1831.017 kb on - strand, within Pf6N2E2_1568at 1831.017 kb on - strand, within Pf6N2E2_1568at 1831.017 kb on - strand, within Pf6N2E2_1568

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
remove
1,828,315 + Pf6N2E2_1565 0.79 -2.1
1,828,316 - Pf6N2E2_1565 0.79 +1.6
1,828,363 - Pf6N2E2_1565 0.85 +0.3
1,828,363 - Pf6N2E2_1565 0.85 -2.4
1,828,442 + +1.3
1,828,442 + +0.6
1,828,512 - +2.2
1,828,816 + Pf6N2E2_1566 0.41 -1.7
1,828,816 + Pf6N2E2_1566 0.41 +1.7
1,828,816 + Pf6N2E2_1566 0.41 -0.5
1,828,817 - Pf6N2E2_1566 0.41 +0.5
1,829,038 + Pf6N2E2_1566 0.70 +2.5
1,829,038 + Pf6N2E2_1566 0.70 -0.6
1,829,225 - +1.0
1,829,319 + -2.5
1,829,457 + Pf6N2E2_1567 0.17 +0.8
1,829,457 + Pf6N2E2_1567 0.17 +1.5
1,829,457 + Pf6N2E2_1567 0.17 +1.8
1,829,457 + Pf6N2E2_1567 0.17 +2.2
1,829,743 + Pf6N2E2_1567 0.49 -0.2
1,829,743 + Pf6N2E2_1567 0.49 -1.3
1,829,743 + Pf6N2E2_1567 0.49 +1.3
1,829,744 - Pf6N2E2_1567 0.49 +0.8
1,829,744 - Pf6N2E2_1567 0.49 -0.2
1,829,744 - Pf6N2E2_1567 0.49 -1.9
1,830,231 - +1.8
1,830,494 + Pf6N2E2_1568 0.25 -2.4
1,830,495 - Pf6N2E2_1568 0.25 +0.1
1,830,495 - Pf6N2E2_1568 0.25 -1.8
1,830,531 - Pf6N2E2_1568 0.28 +1.8
1,830,531 - Pf6N2E2_1568 0.28 -1.7
1,830,873 - Pf6N2E2_1568 0.55 +0.1
1,830,873 - Pf6N2E2_1568 0.55 +0.5
1,830,873 - Pf6N2E2_1568 0.55 +0.9
1,831,016 + Pf6N2E2_1568 0.67 -1.4
1,831,017 - Pf6N2E2_1568 0.67 +0.9
1,831,017 - Pf6N2E2_1568 0.67 +1.8
1,831,017 - Pf6N2E2_1568 0.67 +1.8

Or see this region's nucleotide sequence