Experiment: Zinc chloride 0.0000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1500 and Pf6N2E2_1501 are separated by 34 nucleotides Pf6N2E2_1501 and Pf6N2E2_1502 are separated by 111 nucleotides Pf6N2E2_1502 and Pf6N2E2_1503 are separated by 20 nucleotides Pf6N2E2_1503 and Pf6N2E2_1504 are separated by 109 nucleotides Pf6N2E2_1504 and Pf6N2E2_1505 are separated by 28 nucleotides
Pf6N2E2_1500 - LysR family transcriptional regulator lrhA, at 1,754,098 to 1,754,955
_1500
Pf6N2E2_1501 - Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17), at 1,754,990 to 1,755,433
_1501
Pf6N2E2_1502 - Two-component system regulatory protein, at 1,755,545 to 1,755,922
_1502
Pf6N2E2_1503 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 1,755,943 to 1,758,126
_1503
Pf6N2E2_1504 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 1,758,236 to 1,759,066
_1504
Pf6N2E2_1505 - Transporter, MFS superfamily, at 1,759,095 to 1,760,291
_1505
Position (kb)
1755
1756
1757
1758
1759 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1754.979 kb on - strand at 1755.123 kb on + strand, within Pf6N2E2_1501 at 1755.123 kb on + strand, within Pf6N2E2_1501 at 1755.123 kb on + strand, within Pf6N2E2_1501 at 1755.124 kb on - strand, within Pf6N2E2_1501 at 1755.355 kb on - strand, within Pf6N2E2_1501 at 1755.414 kb on + strand at 1755.414 kb on + strand at 1755.414 kb on + strand at 1755.454 kb on + strand at 1755.454 kb on + strand at 1755.486 kb on + strand at 1755.486 kb on + strand at 1755.486 kb on + strand at 1755.486 kb on + strand at 1755.487 kb on - strand at 1755.715 kb on + strand, within Pf6N2E2_1502 at 1755.715 kb on + strand, within Pf6N2E2_1502 at 1755.932 kb on + strand at 1755.933 kb on - strand at 1756.001 kb on + strand at 1756.005 kb on + strand at 1756.005 kb on + strand at 1756.005 kb on + strand at 1756.005 kb on + strand at 1756.006 kb on - strand at 1756.199 kb on + strand, within Pf6N2E2_1503 at 1756.199 kb on + strand, within Pf6N2E2_1503 at 1756.240 kb on - strand, within Pf6N2E2_1503 at 1756.240 kb on - strand, within Pf6N2E2_1503 at 1756.240 kb on - strand, within Pf6N2E2_1503 at 1756.759 kb on - strand, within Pf6N2E2_1503 at 1756.839 kb on - strand, within Pf6N2E2_1503 at 1756.839 kb on - strand, within Pf6N2E2_1503 at 1756.992 kb on + strand, within Pf6N2E2_1503 at 1756.992 kb on + strand, within Pf6N2E2_1503 at 1757.078 kb on + strand, within Pf6N2E2_1503 at 1757.078 kb on + strand, within Pf6N2E2_1503 at 1757.078 kb on + strand, within Pf6N2E2_1503 at 1757.078 kb on + strand, within Pf6N2E2_1503 at 1757.079 kb on - strand, within Pf6N2E2_1503 at 1757.079 kb on - strand, within Pf6N2E2_1503 at 1757.079 kb on - strand, within Pf6N2E2_1503 at 1757.079 kb on - strand, within Pf6N2E2_1503 at 1757.079 kb on - strand, within Pf6N2E2_1503 at 1757.079 kb on - strand, within Pf6N2E2_1503 at 1757.079 kb on - strand, within Pf6N2E2_1503 at 1757.079 kb on - strand, within Pf6N2E2_1503 at 1757.079 kb on - strand, within Pf6N2E2_1503 at 1757.082 kb on + strand, within Pf6N2E2_1503 at 1757.083 kb on - strand, within Pf6N2E2_1503 at 1757.111 kb on + strand, within Pf6N2E2_1503 at 1757.112 kb on - strand, within Pf6N2E2_1503 at 1757.112 kb on - strand, within Pf6N2E2_1503 at 1757.150 kb on + strand, within Pf6N2E2_1503 at 1757.150 kb on + strand, within Pf6N2E2_1503 at 1757.150 kb on + strand, within Pf6N2E2_1503 at 1757.150 kb on + strand, within Pf6N2E2_1503 at 1757.150 kb on + strand, within Pf6N2E2_1503 at 1757.276 kb on + strand, within Pf6N2E2_1503 at 1757.276 kb on + strand, within Pf6N2E2_1503 at 1757.276 kb on + strand, within Pf6N2E2_1503 at 1757.277 kb on - strand, within Pf6N2E2_1503 at 1757.277 kb on - strand, within Pf6N2E2_1503 at 1757.277 kb on - strand, within Pf6N2E2_1503 at 1757.344 kb on + strand, within Pf6N2E2_1503 at 1757.345 kb on - strand, within Pf6N2E2_1503 at 1757.361 kb on + strand, within Pf6N2E2_1503 at 1757.544 kb on - strand, within Pf6N2E2_1503 at 1757.544 kb on - strand, within Pf6N2E2_1503 at 1757.889 kb on + strand, within Pf6N2E2_1503 at 1757.890 kb on - strand, within Pf6N2E2_1503 at 1757.966 kb on - strand at 1757.988 kb on - strand at 1757.988 kb on - strand at 1757.988 kb on - strand at 1758.020 kb on + strand at 1758.021 kb on - strand at 1758.021 kb on - strand at 1758.078 kb on - strand at 1758.107 kb on - strand at 1758.181 kb on + strand at 1758.181 kb on + strand at 1758.182 kb on - strand at 1758.182 kb on - strand at 1758.182 kb on - strand at 1758.182 kb on - strand at 1758.182 kb on - strand at 1758.182 kb on - strand at 1758.189 kb on + strand at 1758.190 kb on - strand at 1758.472 kb on - strand, within Pf6N2E2_1504 at 1758.943 kb on - strand, within Pf6N2E2_1504 at 1758.943 kb on - strand, within Pf6N2E2_1504 at 1758.963 kb on + strand, within Pf6N2E2_1504 at 1758.963 kb on + strand, within Pf6N2E2_1504 at 1759.048 kb on + strand at 1759.051 kb on + strand at 1759.051 kb on + strand at 1759.051 kb on + strand at 1759.051 kb on + strand at 1759.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M remove 1,754,979 - +0.1 1,755,123 + Pf6N2E2_1501 0.30 +0.4 1,755,123 + Pf6N2E2_1501 0.30 -0.6 1,755,123 + Pf6N2E2_1501 0.30 -0.3 1,755,124 - Pf6N2E2_1501 0.30 +0.9 1,755,355 - Pf6N2E2_1501 0.82 +1.1 1,755,414 + +2.4 1,755,414 + +0.6 1,755,414 + +1.6 1,755,454 + +1.1 1,755,454 + +0.7 1,755,486 + +2.7 1,755,486 + -0.3 1,755,486 + +1.8 1,755,486 + +2.2 1,755,487 - +0.2 1,755,715 + Pf6N2E2_1502 0.45 -3.0 1,755,715 + Pf6N2E2_1502 0.45 -2.1 1,755,932 + -0.4 1,755,933 - -1.3 1,756,001 + -1.4 1,756,005 + -0.3 1,756,005 + -0.2 1,756,005 + -0.5 1,756,005 + +1.1 1,756,006 - +0.2 1,756,199 + Pf6N2E2_1503 0.12 -0.3 1,756,199 + Pf6N2E2_1503 0.12 +0.9 1,756,240 - Pf6N2E2_1503 0.14 -1.8 1,756,240 - Pf6N2E2_1503 0.14 -0.4 1,756,240 - Pf6N2E2_1503 0.14 +0.8 1,756,759 - Pf6N2E2_1503 0.37 +0.9 1,756,839 - Pf6N2E2_1503 0.41 +2.4 1,756,839 - Pf6N2E2_1503 0.41 +0.2 1,756,992 + Pf6N2E2_1503 0.48 +1.0 1,756,992 + Pf6N2E2_1503 0.48 -0.3 1,757,078 + Pf6N2E2_1503 0.52 -0.3 1,757,078 + Pf6N2E2_1503 0.52 -0.3 1,757,078 + Pf6N2E2_1503 0.52 +0.6 1,757,078 + Pf6N2E2_1503 0.52 -0.2 1,757,079 - Pf6N2E2_1503 0.52 +0.4 1,757,079 - Pf6N2E2_1503 0.52 -0.3 1,757,079 - Pf6N2E2_1503 0.52 +0.6 1,757,079 - Pf6N2E2_1503 0.52 +1.8 1,757,079 - Pf6N2E2_1503 0.52 -0.3 1,757,079 - Pf6N2E2_1503 0.52 +0.8 1,757,079 - Pf6N2E2_1503 0.52 -0.3 1,757,079 - Pf6N2E2_1503 0.52 +2.2 1,757,079 - Pf6N2E2_1503 0.52 -1.4 1,757,082 + Pf6N2E2_1503 0.52 +1.4 1,757,083 - Pf6N2E2_1503 0.52 +1.0 1,757,111 + Pf6N2E2_1503 0.53 +0.9 1,757,112 - Pf6N2E2_1503 0.54 -0.8 1,757,112 - Pf6N2E2_1503 0.54 -0.5 1,757,150 + Pf6N2E2_1503 0.55 +0.2 1,757,150 + Pf6N2E2_1503 0.55 -0.7 1,757,150 + Pf6N2E2_1503 0.55 -1.5 1,757,150 + Pf6N2E2_1503 0.55 +1.3 1,757,150 + Pf6N2E2_1503 0.55 -2.7 1,757,276 + Pf6N2E2_1503 0.61 +2.0 1,757,276 + Pf6N2E2_1503 0.61 +0.1 1,757,276 + Pf6N2E2_1503 0.61 +1.4 1,757,277 - Pf6N2E2_1503 0.61 -3.0 1,757,277 - Pf6N2E2_1503 0.61 +0.9 1,757,277 - Pf6N2E2_1503 0.61 +0.7 1,757,344 + Pf6N2E2_1503 0.64 +0.6 1,757,345 - Pf6N2E2_1503 0.64 -0.4 1,757,361 + Pf6N2E2_1503 0.65 +1.7 1,757,544 - Pf6N2E2_1503 0.73 +1.3 1,757,544 - Pf6N2E2_1503 0.73 +0.5 1,757,889 + Pf6N2E2_1503 0.89 -0.7 1,757,890 - Pf6N2E2_1503 0.89 +1.4 1,757,966 - +0.2 1,757,988 - +2.8 1,757,988 - +0.3 1,757,988 - +2.6 1,758,020 + +1.2 1,758,021 - -0.6 1,758,021 - +1.0 1,758,078 - -0.0 1,758,107 - +1.5 1,758,181 + +0.6 1,758,181 + +2.4 1,758,182 - +1.0 1,758,182 - -2.6 1,758,182 - +0.9 1,758,182 - -1.9 1,758,182 - +0.8 1,758,182 - +0.4 1,758,189 + +1.2 1,758,190 - +1.2 1,758,472 - Pf6N2E2_1504 0.28 +1.5 1,758,943 - Pf6N2E2_1504 0.85 -0.9 1,758,943 - Pf6N2E2_1504 0.85 -1.2 1,758,963 + Pf6N2E2_1504 0.87 -0.9 1,758,963 + Pf6N2E2_1504 0.87 +1.6 1,759,048 + -0.0 1,759,051 + -0.8 1,759,051 + +1.0 1,759,051 + +0.2 1,759,051 + -0.5 1,759,052 - +1.1
Or see this region's nucleotide sequence