Strain Fitness in Pantoea sp. MT58 around IAI47_10545

Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,232,406	-				+0.2
2,232,415	+				+1.4
2,232,422	+				+0.9
2,232,422	+				-0.2
2,232,422	+				+0.2
2,232,423	-				+1.8
2,232,434	+				+0.5
2,232,434	+				-0.8
2,232,434	+				-1.0
2,232,435	-				+1.1
2,232,435	-				+1.2
2,232,436	+				+0.9
2,232,436	+				+1.8
2,232,436	+				+1.8
2,232,437	-				+1.2
2,232,437	-				+1.5
2,232,437	-				+1.1
2,232,437	-				-1.1
2,232,437	-				+0.1
2,232,437	-				-0.0
2,232,437	-				-0.0
2,232,501	+		IAI47_10535	0.20	+1.4
2,232,502	-		IAI47_10535	0.20	+0.5
2,232,505	+		IAI47_10535	0.21	+1.0
2,232,505	+		IAI47_10535	0.21	+1.0
2,232,505	+		IAI47_10535	0.21	+1.4
2,232,505	+		IAI47_10535	0.21	+1.4
2,232,505	+		IAI47_10535	0.21	+0.4
2,232,506	-		IAI47_10535	0.22	+0.1
2,232,506	-		IAI47_10535	0.22	-1.5
2,232,535	+		IAI47_10535	0.34	-1.7
2,232,535	+		IAI47_10535	0.34	+0.8
2,232,535	+		IAI47_10535	0.34	+1.4
2,232,535	+		IAI47_10535	0.34	+1.6
2,232,535	+		IAI47_10535	0.34	+0.1
2,232,536	-		IAI47_10535	0.35	-0.1
2,232,536	-		IAI47_10535	0.35	-1.2
2,232,536	-		IAI47_10535	0.35	-0.0
2,232,536	-		IAI47_10535	0.35	-1.2
2,232,538	+		IAI47_10535	0.35	+1.0
2,232,538	+		IAI47_10535	0.35	-0.2
2,232,539	-		IAI47_10535	0.36	+0.4
2,232,539	-		IAI47_10535	0.36	-1.0
2,232,686	+				+0.9
2,232,686	+				-0.3
2,232,687	-				-0.4
2,232,687	-				+1.1
2,232,687	-				-1.6
2,232,689	+				+1.4
2,232,689	+				+0.8
2,232,689	+				-0.3
2,232,690	-				+0.2
2,232,692	-				+0.9
2,232,723	+				-1.3
2,232,723	+				+0.7
2,232,723	+				+0.4
2,232,745	+		IAI47_10540	0.18	-0.8
2,232,745	+		IAI47_10540	0.18	-1.5
2,232,745	+		IAI47_10540	0.18	+1.6
2,232,745	+		IAI47_10540	0.18	+0.7
2,232,746	-		IAI47_10540	0.18	-2.2
2,232,746	-		IAI47_10540	0.18	-1.9
2,232,746	-		IAI47_10540	0.18	-1.6
2,232,746	-		IAI47_10540	0.18	+4.1
2,232,746	-		IAI47_10540	0.18	-1.6
2,232,753	+		IAI47_10540	0.21	+1.6
2,232,753	+		IAI47_10540	0.21	+0.2
2,232,754	-		IAI47_10540	0.22	-0.8
2,232,754	-		IAI47_10540	0.22	-0.6
2,232,754	-		IAI47_10540	0.22	+0.1
2,232,756	+		IAI47_10540	0.23	+3.0
2,232,756	+		IAI47_10540	0.23	-1.1
2,232,757	-		IAI47_10540	0.23	+0.8
2,232,757	-		IAI47_10540	0.23	+0.1
2,232,773	-		IAI47_10540	0.30	+0.1
2,232,779	+		IAI47_10540	0.32	+0.9
2,232,779	+		IAI47_10540	0.32	+1.1
2,232,779	+		IAI47_10540	0.32	+0.2
2,232,780	-		IAI47_10540	0.33	+0.1
2,232,811	+		IAI47_10540	0.46	+1.5
2,232,811	+		IAI47_10540	0.46	+0.1
2,232,812	-		IAI47_10540	0.47	-0.4
2,232,812	-		IAI47_10540	0.47	-1.3
2,232,814	+		IAI47_10540	0.48	-0.3
2,232,815	-		IAI47_10540	0.48	-1.1
2,232,858	-		IAI47_10540	0.67	+0.4
2,232,859	+		IAI47_10540	0.67	+2.4
2,232,892	+		IAI47_10540	0.81	+2.5
2,232,893	-		IAI47_10540	0.82	+0.8
2,232,893	-		IAI47_10540	0.82	+0.3
2,232,932	+				+0.6
2,232,958	+				+0.8
2,232,968	+				+1.4
2,233,012	-				+0.3
2,233,012	-				+2.2
2,233,012	-				-0.9
2,233,013	+				-0.2
2,233,013	+				-1.1
2,233,014	-				+0.6
2,233,071	+				-0.8
2,233,087	+				-0.7
2,233,088	-				-0.9
2,233,088	-				+0.8
2,233,088	-				+0.8
2,233,089	+				-0.0
2,233,090	-				-0.6
2,233,107	-				+1.2
2,233,114	-				+0.2
2,233,211	+				-1.4
2,233,211	+				+1.5
2,233,212	-				+0.5
2,233,254	+				-1.5
2,233,272	+				-0.1
2,233,273	-				+0.8
2,233,275	-				-0.5
2,233,328	+				-0.5
2,233,359	+				-1.5
2,233,359	+				-0.9
2,233,368	+				-0.1
2,233,369	-				+0.2
2,233,369	-				-1.2
2,233,372	+				-1.3
2,233,395	+				+1.0
2,233,396	-				-0.6
2,233,414	+				+1.1
2,233,414	+				+0.8
2,233,415	-				+0.3
2,233,480	+		IAI47_10545	0.29	-1.0
2,233,480	+		IAI47_10545	0.29	+0.8
2,233,480	+		IAI47_10545	0.29	+1.4
2,233,481	-		IAI47_10545	0.30	-1.4
2,233,481	-		IAI47_10545	0.30	-0.2
2,233,481	-		IAI47_10545	0.30	-2.5
2,233,546	-		IAI47_10545	0.53	+2.0
2,233,618	-		IAI47_10545	0.80	-1.9
2,233,671	-				-0.8
2,233,671	-				-1.1
2,233,671	-				+0.3
2,233,676	+				+0.4
2,233,676	+				-1.4
2,233,677	-				+0.8
2,233,677	-				-0.6
2,233,737	+				+0.3
2,233,738	-				-1.3
2,233,738	-				-1.8
2,233,738	-				+1.0
2,233,738	-				+0.3
2,233,738	-				+0.4
2,233,738	-				+0.8
2,233,738	-				+0.0
2,233,738	-				+0.2
2,233,814	+				-0.4
2,233,814	+				+0.1
2,233,815	-				-1.0
2,233,815	-				+1.3
2,233,815	-				+1.1
2,233,830	+				-0.6
2,233,831	-				+0.2
2,233,852	-				+3.8
2,233,905	+				-0.7
2,233,906	-				-0.5
2,233,951	-		IAI47_10550	0.20	+1.0
2,233,951	-		IAI47_10550	0.20	+0.7
2,233,999	+		IAI47_10550	0.40	-0.0
2,234,000	-		IAI47_10550	0.41	-1.5
2,234,000	-		IAI47_10550	0.41	+1.4
2,234,040	-		IAI47_10550	0.57	+1.2
2,234,040	-		IAI47_10550	0.57	+0.4
2,234,040	-		IAI47_10550	0.57	-0.7
2,234,040	-		IAI47_10550	0.57	+1.8
2,234,040	-		IAI47_10550	0.57	+0.1
2,234,106	+		IAI47_10550	0.85	+0.8
2,234,140	-				+0.8
2,234,287	+		IAI47_10555	0.63	-0.4
2,234,316	+		IAI47_10555	0.78	+3.3
2,234,316	+		IAI47_10555	0.78	-0.0
2,234,317	-		IAI47_10555	0.78	+0.0
2,234,317	-		IAI47_10555	0.78	+2.0
2,234,331	+		IAI47_10555	0.86	+0.1
2,234,331	+		IAI47_10555	0.86	-1.2
2,234,332	-		IAI47_10555	0.86	+1.0
2,234,332	-		IAI47_10555	0.86	-0.2
2,234,332	-		IAI47_10555	0.86	+1.2
2,234,336	+		IAI47_10555	0.88	+0.8
2,234,337	-		IAI47_10555	0.89	+0.0
2,234,343	+				-1.9
2,234,343	+				-0.8
2,234,344	-				+0.2
2,234,358	+				+0.4
2,234,358	+				+1.0
2,234,358	+				-1.5
2,234,359	-				+0.5
2,234,359	-				-0.9
2,234,359	-				+1.4
2,234,359	-				-0.4
2,234,408	+				-0.0
2,234,408	+				-2.1
2,234,408	+				-1.6
2,234,409	-				+1.2
2,234,409	-				-1.1
2,234,409	-				-0.2
2,234,409	-				+0.6
2,234,409	-				-0.8
2,234,410	+				-0.7
2,234,411	-				+0.8
2,234,429	+				+1.4
2,234,461	-				-0.6
2,234,461	-				-0.8
2,234,461	-				+1.1
2,234,461	-				+0.1
2,234,469	-				-0.8
2,234,469	-				-1.2
2,234,536	+		IAI47_10560	0.13	-0.0
2,234,536	+		IAI47_10560	0.13	-0.6
2,234,537	-		IAI47_10560	0.13	+0.8
2,234,541	+		IAI47_10560	0.13	+0.4
2,234,542	-		IAI47_10560	0.13	+2.3
2,234,559	-		IAI47_10560	0.16	+0.2
2,234,597	-		IAI47_10560	0.22	+0.6
2,234,597	-		IAI47_10560	0.22	+1.3
2,234,597	-		IAI47_10560	0.22	+1.9
2,234,648	-		IAI47_10560	0.31	+1.1
2,234,648	-		IAI47_10560	0.31	-0.0
2,234,648	-		IAI47_10560	0.31	-0.2