Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06400

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06399 and H281DRAFT_06400 are separated by 812 nucleotidesH281DRAFT_06400 and H281DRAFT_06401 are separated by 154 nucleotides H281DRAFT_06399: H281DRAFT_06399 - transcriptional regulator, GntR family, at 70,570 to 71,418 _06399 H281DRAFT_06400: H281DRAFT_06400 - hypothetical protein, at 72,231 to 72,695 _06400 H281DRAFT_06401: H281DRAFT_06401 - 5S rRNA. Bacterial TSU, at 72,850 to 72,963 _06401 Position (kb) 72 73Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 71.271 kb on - strand, within H281DRAFT_06399at 71.340 kb on + strandat 71.793 kb on - strandat 71.793 kb on - strandat 71.802 kb on + strandat 71.803 kb on - strandat 72.118 kb on - strandat 72.243 kb on - strandat 72.356 kb on - strand, within H281DRAFT_06400at 72.413 kb on - strand, within H281DRAFT_06400at 72.522 kb on - strand, within H281DRAFT_06400at 72.522 kb on - strand, within H281DRAFT_06400at 72.582 kb on + strand, within H281DRAFT_06400at 72.583 kb on - strand, within H281DRAFT_06400at 72.620 kb on + strand, within H281DRAFT_06400at 72.621 kb on - strand, within H281DRAFT_06400at 72.651 kb on - strandat 72.651 kb on - strandat 72.651 kb on - strandat 72.693 kb on + strandat 72.694 kb on - strandat 72.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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71,271 - H281DRAFT_06399 0.83 -2.3
71,340 + +1.0
71,793 - +0.1
71,793 - -0.7
71,802 + -0.3
71,803 - -0.4
72,118 - +0.7
72,243 - -0.6
72,356 - H281DRAFT_06400 0.27 -2.1
72,413 - H281DRAFT_06400 0.39 +2.4
72,522 - H281DRAFT_06400 0.63 +0.4
72,522 - H281DRAFT_06400 0.63 -3.9
72,582 + H281DRAFT_06400 0.75 +1.9
72,583 - H281DRAFT_06400 0.76 +2.8
72,620 + H281DRAFT_06400 0.84 -2.7
72,621 - H281DRAFT_06400 0.84 +0.1
72,651 - -1.7
72,651 - -3.2
72,651 - +0.6
72,693 + -0.0
72,694 - -0.5
72,721 - -1.7

Or see this region's nucleotide sequence