Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06308 and H281DRAFT_06309 are separated by 420 nucleotides H281DRAFT_06309 and H281DRAFT_06310 are separated by 16 nucleotides H281DRAFT_06310 and H281DRAFT_06311 are separated by 207 nucleotides
H281DRAFT_06308: H281DRAFT_06308 - malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 90,820 to 93,159
_06308
H281DRAFT_06309: H281DRAFT_06309 - ribonuclease T1, at 93,580 to 93,996
_06309
H281DRAFT_06310: H281DRAFT_06310 - Barstar (barnase inhibitor), at 94,013 to 94,573
_06310
H281DRAFT_06311: H281DRAFT_06311 - 16S rRNA (uracil1498-N3)-methyltransferase, at 94,781 to 95,521
_06311
Position (kb) 93
94 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 92.580 kb on + strand at 92.621 kb on - strand, within H281DRAFT_06308 at 92.832 kb on + strand at 93.001 kb on + strand at 93.002 kb on - strand at 93.170 kb on - strand at 93.208 kb on + strand at 93.397 kb on + strand at 93.404 kb on - strand at 93.522 kb on + strand at 93.546 kb on - strand at 93.559 kb on + strand at 93.560 kb on - strand at 93.560 kb on - strand at 93.625 kb on - strand, within H281DRAFT_06309 at 93.625 kb on - strand, within H281DRAFT_06309 at 93.676 kb on + strand at 93.753 kb on + strand, within H281DRAFT_06309 at 93.753 kb on + strand, within H281DRAFT_06309 at 93.753 kb on + strand, within H281DRAFT_06309 at 93.753 kb on + strand at 93.753 kb on + strand, within H281DRAFT_06309 at 93.754 kb on - strand, within H281DRAFT_06309 at 93.754 kb on - strand, within H281DRAFT_06309 at 93.754 kb on - strand, within H281DRAFT_06309 at 93.754 kb on - strand, within H281DRAFT_06309 at 93.754 kb on - strand, within H281DRAFT_06309 at 93.754 kb on - strand, within H281DRAFT_06309 at 93.754 kb on - strand, within H281DRAFT_06309 at 93.784 kb on + strand at 93.865 kb on + strand, within H281DRAFT_06309 at 93.865 kb on + strand, within H281DRAFT_06309 at 93.865 kb on + strand, within H281DRAFT_06309 at 93.865 kb on + strand, within H281DRAFT_06309 at 93.866 kb on - strand, within H281DRAFT_06309 at 93.866 kb on - strand, within H281DRAFT_06309 at 93.892 kb on - strand, within H281DRAFT_06309 at 93.949 kb on + strand, within H281DRAFT_06309 at 93.953 kb on - strand, within H281DRAFT_06309 at 93.967 kb on + strand at 93.968 kb on - strand at 93.968 kb on - strand at 93.968 kb on - strand at 93.979 kb on - strand at 93.984 kb on + strand at 93.984 kb on + strand at 93.984 kb on + strand at 94.028 kb on + strand at 94.028 kb on + strand at 94.210 kb on - strand, within H281DRAFT_06310 at 94.210 kb on - strand, within H281DRAFT_06310 at 94.210 kb on - strand, within H281DRAFT_06310 at 94.281 kb on - strand, within H281DRAFT_06310 at 94.286 kb on + strand, within H281DRAFT_06310 at 94.287 kb on - strand, within H281DRAFT_06310 at 94.333 kb on + strand, within H281DRAFT_06310 at 94.333 kb on + strand, within H281DRAFT_06310 at 94.334 kb on - strand, within H281DRAFT_06310 at 94.371 kb on - strand, within H281DRAFT_06310 at 94.371 kb on - strand, within H281DRAFT_06310 at 94.371 kb on - strand at 94.408 kb on + strand, within H281DRAFT_06310 at 94.559 kb on + strand at 94.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 92,580 + -1.7 92,621 - H281DRAFT_06308 0.77 -0.6 92,832 + -1.7 93,001 + +1.7 93,002 - -2.1 93,170 - +0.9 93,208 + +0.9 93,397 + +0.5 93,404 - -0.2 93,522 + +0.5 93,546 - -2.7 93,559 + -0.1 93,560 - -1.6 93,560 - +0.2 93,625 - H281DRAFT_06309 0.11 +0.7 93,625 - H281DRAFT_06309 0.11 +0.7 93,676 + +0.1 93,753 + H281DRAFT_06309 0.41 -0.7 93,753 + H281DRAFT_06309 0.41 +0.9 93,753 + H281DRAFT_06309 0.41 -1.2 93,753 + -1.3 93,753 + H281DRAFT_06309 0.41 -0.9 93,754 - H281DRAFT_06309 0.42 +1.1 93,754 - H281DRAFT_06309 0.42 +1.7 93,754 - H281DRAFT_06309 0.42 +2.7 93,754 - H281DRAFT_06309 0.42 -1.4 93,754 - H281DRAFT_06309 0.42 +1.8 93,754 - H281DRAFT_06309 0.42 +1.2 93,754 - H281DRAFT_06309 0.42 +2.9 93,784 + -1.4 93,865 + H281DRAFT_06309 0.68 +0.8 93,865 + H281DRAFT_06309 0.68 +0.4 93,865 + H281DRAFT_06309 0.68 +0.3 93,865 + H281DRAFT_06309 0.68 +0.0 93,866 - H281DRAFT_06309 0.69 +0.2 93,866 - H281DRAFT_06309 0.69 +1.9 93,892 - H281DRAFT_06309 0.75 -0.6 93,949 + H281DRAFT_06309 0.88 +0.6 93,953 - H281DRAFT_06309 0.89 +0.6 93,967 + -0.3 93,968 - -0.5 93,968 - -0.1 93,968 - +1.1 93,979 - +0.5 93,984 + +1.5 93,984 + +0.6 93,984 + +0.6 94,028 + +0.1 94,028 + -0.1 94,210 - H281DRAFT_06310 0.35 -0.0 94,210 - H281DRAFT_06310 0.35 +0.4 94,210 - H281DRAFT_06310 0.35 -0.6 94,281 - H281DRAFT_06310 0.48 -0.9 94,286 + H281DRAFT_06310 0.49 +0.8 94,287 - H281DRAFT_06310 0.49 +1.7 94,333 + H281DRAFT_06310 0.57 +1.0 94,333 + H281DRAFT_06310 0.57 +0.1 94,334 - H281DRAFT_06310 0.57 +1.3 94,371 - H281DRAFT_06310 0.64 -2.0 94,371 - H281DRAFT_06310 0.64 -1.4 94,371 - -1.9 94,408 + H281DRAFT_06310 0.70 +1.0 94,559 + +0.2 94,743 - +0.8
Or see this region's nucleotide sequence