Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06186

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06185 and H281DRAFT_06186 are separated by 48 nucleotidesH281DRAFT_06186 and H281DRAFT_06187 are separated by 159 nucleotidesH281DRAFT_06187 and H281DRAFT_06188 are separated by 72 nucleotides H281DRAFT_06185: H281DRAFT_06185 - transposase, at 74,729 to 76,192 _06185 H281DRAFT_06186: H281DRAFT_06186 - Superfamily I DNA and RNA helicases, at 76,241 to 77,722 _06186 H281DRAFT_06187: H281DRAFT_06187 - hypothetical protein, at 77,882 to 78,349 _06187 H281DRAFT_06188: H281DRAFT_06188 - Site-specific recombinase XerD, at 78,422 to 79,405 _06188 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 75.607 kb on + strand, within H281DRAFT_06185at 75.638 kb on - strand, within H281DRAFT_06185at 75.658 kb on - strand, within H281DRAFT_06185at 75.673 kb on + strand, within H281DRAFT_06185at 75.674 kb on - strand, within H281DRAFT_06185at 75.677 kb on + strand, within H281DRAFT_06185at 75.677 kb on + strand, within H281DRAFT_06185at 75.677 kb on + strand, within H281DRAFT_06185at 75.677 kb on + strand, within H281DRAFT_06185at 75.678 kb on - strand, within H281DRAFT_06185at 75.756 kb on + strand, within H281DRAFT_06185at 75.756 kb on + strand, within H281DRAFT_06185at 75.756 kb on + strand, within H281DRAFT_06185at 75.757 kb on - strand, within H281DRAFT_06185at 75.879 kb on + strand, within H281DRAFT_06185at 75.880 kb on - strand, within H281DRAFT_06185at 75.880 kb on - strand, within H281DRAFT_06185at 75.880 kb on - strand, within H281DRAFT_06185at 75.881 kb on + strand, within H281DRAFT_06185at 75.882 kb on - strand, within H281DRAFT_06185at 75.882 kb on - strand, within H281DRAFT_06185at 75.910 kb on - strand, within H281DRAFT_06185at 76.154 kb on + strandat 76.154 kb on + strandat 76.331 kb on - strandat 76.341 kb on + strandat 76.341 kb on + strandat 76.342 kb on - strandat 76.342 kb on - strandat 76.372 kb on + strandat 76.372 kb on + strandat 76.456 kb on + strand, within H281DRAFT_06186at 76.456 kb on + strand, within H281DRAFT_06186at 76.457 kb on - strand, within H281DRAFT_06186at 76.470 kb on + strand, within H281DRAFT_06186at 76.470 kb on + strand, within H281DRAFT_06186at 76.721 kb on - strand, within H281DRAFT_06186at 76.721 kb on - strand, within H281DRAFT_06186at 76.721 kb on - strandat 76.721 kb on - strand, within H281DRAFT_06186at 76.809 kb on + strand, within H281DRAFT_06186at 76.809 kb on + strand, within H281DRAFT_06186at 76.832 kb on + strandat 76.832 kb on + strand, within H281DRAFT_06186at 76.832 kb on + strand, within H281DRAFT_06186at 76.832 kb on + strand, within H281DRAFT_06186at 76.832 kb on + strand, within H281DRAFT_06186at 76.833 kb on - strand, within H281DRAFT_06186at 76.833 kb on - strand, within H281DRAFT_06186at 76.989 kb on + strand, within H281DRAFT_06186at 76.989 kb on + strand, within H281DRAFT_06186at 76.990 kb on - strand, within H281DRAFT_06186at 76.990 kb on - strand, within H281DRAFT_06186at 77.016 kb on + strand, within H281DRAFT_06186at 77.016 kb on + strand, within H281DRAFT_06186at 77.016 kb on + strand, within H281DRAFT_06186at 77.017 kb on - strand, within H281DRAFT_06186at 77.142 kb on + strand, within H281DRAFT_06186at 77.142 kb on + strand, within H281DRAFT_06186at 77.142 kb on + strand, within H281DRAFT_06186at 77.142 kb on + strand, within H281DRAFT_06186at 77.143 kb on - strand, within H281DRAFT_06186at 77.202 kb on - strand, within H281DRAFT_06186at 77.202 kb on - strand, within H281DRAFT_06186at 77.640 kb on + strandat 77.655 kb on - strandat 77.722 kb on + strandat 77.779 kb on + strandat 77.779 kb on + strandat 77.779 kb on + strandat 77.780 kb on - strandat 77.780 kb on - strandat 77.780 kb on - strandat 77.896 kb on + strandat 77.897 kb on - strandat 77.900 kb on + strandat 77.901 kb on - strandat 77.901 kb on - strandat 77.901 kb on - strandat 77.901 kb on - strandat 77.901 kb on - strandat 77.942 kb on + strand, within H281DRAFT_06187at 78.019 kb on + strand, within H281DRAFT_06187at 78.019 kb on + strand, within H281DRAFT_06187at 78.019 kb on + strand, within H281DRAFT_06187at 78.020 kb on - strand, within H281DRAFT_06187at 78.020 kb on - strand, within H281DRAFT_06187at 78.020 kb on - strand, within H281DRAFT_06187at 78.020 kb on - strand, within H281DRAFT_06187at 78.020 kb on - strand, within H281DRAFT_06187at 78.054 kb on + strand, within H281DRAFT_06187at 78.055 kb on - strand, within H281DRAFT_06187at 78.055 kb on - strand, within H281DRAFT_06187at 78.342 kb on + strandat 78.343 kb on - strandat 78.351 kb on + strandat 78.351 kb on + strandat 78.351 kb on + strandat 78.351 kb on + strandat 78.352 kb on - strandat 78.352 kb on - strandat 78.352 kb on - strandat 78.544 kb on + strand, within H281DRAFT_06188

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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75,607 + H281DRAFT_06185 0.60 +0.5
75,638 - H281DRAFT_06185 0.62 -2.4
75,658 - H281DRAFT_06185 0.63 +2.3
75,673 + H281DRAFT_06185 0.64 -0.1
75,674 - H281DRAFT_06185 0.65 +0.2
75,677 + H281DRAFT_06185 0.65 +0.0
75,677 + H281DRAFT_06185 0.65 -3.2
75,677 + H281DRAFT_06185 0.65 -0.0
75,677 + H281DRAFT_06185 0.65 +0.5
75,678 - H281DRAFT_06185 0.65 -0.1
75,756 + H281DRAFT_06185 0.70 +0.5
75,756 + H281DRAFT_06185 0.70 -0.3
75,756 + H281DRAFT_06185 0.70 -0.3
75,757 - H281DRAFT_06185 0.70 +0.2
75,879 + H281DRAFT_06185 0.79 +0.1
75,880 - H281DRAFT_06185 0.79 -1.0
75,880 - H281DRAFT_06185 0.79 -0.1
75,880 - H281DRAFT_06185 0.79 -3.7
75,881 + H281DRAFT_06185 0.79 -0.6
75,882 - H281DRAFT_06185 0.79 +0.7
75,882 - H281DRAFT_06185 0.79 +0.9
75,910 - H281DRAFT_06185 0.81 -0.2
76,154 + -2.5
76,154 + +0.5
76,331 - -0.4
76,341 + +1.7
76,341 + -2.6
76,342 - -0.4
76,342 - +1.0
76,372 + +0.7
76,372 + +0.1
76,456 + H281DRAFT_06186 0.15 +0.2
76,456 + H281DRAFT_06186 0.15 -0.2
76,457 - H281DRAFT_06186 0.15 -0.1
76,470 + H281DRAFT_06186 0.15 +0.1
76,470 + H281DRAFT_06186 0.15 +0.1
76,721 - H281DRAFT_06186 0.32 -0.2
76,721 - H281DRAFT_06186 0.32 +1.4
76,721 - -2.0
76,721 - H281DRAFT_06186 0.32 +0.5
76,809 + H281DRAFT_06186 0.38 +0.3
76,809 + H281DRAFT_06186 0.38 +0.7
76,832 + +2.4
76,832 + H281DRAFT_06186 0.40 -3.4
76,832 + H281DRAFT_06186 0.40 +0.3
76,832 + H281DRAFT_06186 0.40 +0.3
76,832 + H281DRAFT_06186 0.40 +0.9
76,833 - H281DRAFT_06186 0.40 +1.4
76,833 - H281DRAFT_06186 0.40 -0.6
76,989 + H281DRAFT_06186 0.50 -1.7
76,989 + H281DRAFT_06186 0.50 +0.0
76,990 - H281DRAFT_06186 0.51 -1.4
76,990 - H281DRAFT_06186 0.51 -1.1
77,016 + H281DRAFT_06186 0.52 -1.3
77,016 + H281DRAFT_06186 0.52 -0.1
77,016 + H281DRAFT_06186 0.52 -1.1
77,017 - H281DRAFT_06186 0.52 +0.7
77,142 + H281DRAFT_06186 0.61 -0.1
77,142 + H281DRAFT_06186 0.61 +1.2
77,142 + H281DRAFT_06186 0.61 -0.8
77,142 + H281DRAFT_06186 0.61 -0.1
77,143 - H281DRAFT_06186 0.61 -0.0
77,202 - H281DRAFT_06186 0.65 +0.2
77,202 - H281DRAFT_06186 0.65 -3.3
77,640 + +0.2
77,655 - +0.3
77,722 + -1.9
77,779 + -0.1
77,779 + -0.1
77,779 + +0.7
77,780 - +0.7
77,780 - -0.3
77,780 - -0.8
77,896 + -0.4
77,897 - +0.0
77,900 + +0.4
77,901 - -1.1
77,901 - -0.8
77,901 - +2.1
77,901 - -0.6
77,901 - +0.6
77,942 + H281DRAFT_06187 0.13 -0.5
78,019 + H281DRAFT_06187 0.29 -1.1
78,019 + H281DRAFT_06187 0.29 -0.4
78,019 + H281DRAFT_06187 0.29 +2.0
78,020 - H281DRAFT_06187 0.29 -0.1
78,020 - H281DRAFT_06187 0.29 -0.7
78,020 - H281DRAFT_06187 0.29 -0.8
78,020 - H281DRAFT_06187 0.29 -0.3
78,020 - H281DRAFT_06187 0.29 -1.0
78,054 + H281DRAFT_06187 0.37 +1.0
78,055 - H281DRAFT_06187 0.37 +0.9
78,055 - H281DRAFT_06187 0.37 +0.7
78,342 + -1.8
78,343 - -0.6
78,351 + +0.4
78,351 + +0.0
78,351 + -0.4
78,351 + -1.1
78,352 - +0.1
78,352 - -2.0
78,352 - -0.1
78,544 + H281DRAFT_06188 0.12 +0.9

Or see this region's nucleotide sequence