Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05351 and H281DRAFT_05352 are separated by 283 nucleotides H281DRAFT_05352 and H281DRAFT_05353 are separated by 2 nucleotides H281DRAFT_05353 and H281DRAFT_05354 are separated by 256 nucleotides
H281DRAFT_05351: H281DRAFT_05351 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 103,874 to 104,728
_05351
H281DRAFT_05352: H281DRAFT_05352 - serine/threonine-protein kinase HipA, at 105,012 to 106,352
_05352
H281DRAFT_05353: H281DRAFT_05353 - HTH-type transcriptional regulator / antitoxin HipB, at 106,355 to 106,609
_05353
H281DRAFT_05354: H281DRAFT_05354 - Glycine/D-amino acid oxidase (deaminating), at 106,866 to 108,206
_05354
Position (kb)
105
106
107 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 104.301 kb on + strand, within H281DRAFT_05351 at 104.313 kb on + strand, within H281DRAFT_05351 at 104.526 kb on + strand, within H281DRAFT_05351 at 104.728 kb on + strand at 104.728 kb on + strand at 104.728 kb on + strand at 104.729 kb on - strand at 104.729 kb on - strand at 104.782 kb on - strand at 104.819 kb on - strand at 104.840 kb on - strand at 104.871 kb on - strand at 104.928 kb on - strand at 105.124 kb on - strand at 105.124 kb on - strand at 105.124 kb on - strand at 105.203 kb on + strand, within H281DRAFT_05352 at 105.204 kb on - strand, within H281DRAFT_05352 at 105.204 kb on - strand, within H281DRAFT_05352 at 105.300 kb on - strand at 105.556 kb on + strand, within H281DRAFT_05352 at 105.694 kb on + strand, within H281DRAFT_05352 at 105.695 kb on - strand, within H281DRAFT_05352 at 105.705 kb on + strand, within H281DRAFT_05352 at 105.792 kb on - strand, within H281DRAFT_05352 at 105.990 kb on + strand, within H281DRAFT_05352 at 106.151 kb on - strand, within H281DRAFT_05352 at 106.252 kb on + strand at 106.412 kb on + strand, within H281DRAFT_05353 at 106.696 kb on - strand at 106.838 kb on + strand at 106.839 kb on - strand at 106.850 kb on + strand at 106.980 kb on + strand at 106.981 kb on - strand at 106.981 kb on - strand at 106.981 kb on - strand at 106.981 kb on - strand at 107.116 kb on + strand, within H281DRAFT_05354 at 107.116 kb on + strand, within H281DRAFT_05354 at 107.184 kb on + strand, within H281DRAFT_05354 at 107.185 kb on - strand, within H281DRAFT_05354 at 107.185 kb on - strand, within H281DRAFT_05354 at 107.265 kb on - strand, within H281DRAFT_05354 at 107.332 kb on - strand, within H281DRAFT_05354
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 104,301 + H281DRAFT_05351 0.50 -3.6 104,313 + H281DRAFT_05351 0.51 -1.9 104,526 + H281DRAFT_05351 0.76 -0.9 104,728 + -0.5 104,728 + +4.7 104,728 + +1.5 104,729 - -0.3 104,729 - -0.7 104,782 - -0.2 104,819 - +0.3 104,840 - +0.7 104,871 - -1.1 104,928 - +0.1 105,124 - +0.3 105,124 - +0.6 105,124 - +0.1 105,203 + H281DRAFT_05352 0.14 +1.0 105,204 - H281DRAFT_05352 0.14 +1.1 105,204 - H281DRAFT_05352 0.14 +0.8 105,300 - -1.8 105,556 + H281DRAFT_05352 0.41 +0.4 105,694 + H281DRAFT_05352 0.51 +1.0 105,695 - H281DRAFT_05352 0.51 -0.3 105,705 + H281DRAFT_05352 0.52 -0.4 105,792 - H281DRAFT_05352 0.58 +0.8 105,990 + H281DRAFT_05352 0.73 -0.7 106,151 - H281DRAFT_05352 0.85 -0.1 106,252 + -0.1 106,412 + H281DRAFT_05353 0.22 -1.6 106,696 - -0.1 106,838 + -1.4 106,839 - +2.3 106,850 + +0.7 106,980 + -0.4 106,981 - -0.5 106,981 - +0.8 106,981 - +1.8 106,981 - -1.3 107,116 + H281DRAFT_05354 0.19 -0.5 107,116 + H281DRAFT_05354 0.19 -0.5 107,184 + H281DRAFT_05354 0.24 +0.4 107,185 - H281DRAFT_05354 0.24 +0.3 107,185 - H281DRAFT_05354 0.24 +0.3 107,265 - H281DRAFT_05354 0.30 +0.8 107,332 - H281DRAFT_05354 0.35 -0.1
Or see this region's nucleotide sequence