Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05274

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05273 and H281DRAFT_05274 are separated by 66 nucleotidesH281DRAFT_05274 and H281DRAFT_05275 are separated by 178 nucleotides H281DRAFT_05273: H281DRAFT_05273 - Predicted arabinose efflux permease, MFS family, at 15,711 to 17,012 _05273 H281DRAFT_05274: H281DRAFT_05274 - Uncharacterized protein YcsI, UPF0317 family, at 17,079 to 17,858 _05274 H281DRAFT_05275: H281DRAFT_05275 - transcriptional regulator, LysR family, at 18,037 to 18,978 _05275 Position (kb) 17 18Strain fitness (log2 ratio) -2 -1 0 1at 16.103 kb on - strand, within H281DRAFT_05273at 17.080 kb on + strandat 17.170 kb on - strand, within H281DRAFT_05274at 17.446 kb on - strand, within H281DRAFT_05274at 17.851 kb on + strandat 18.142 kb on - strand, within H281DRAFT_05275at 18.342 kb on + strand, within H281DRAFT_05275at 18.342 kb on + strand, within H281DRAFT_05275at 18.342 kb on + strand, within H281DRAFT_05275at 18.342 kb on + strand, within H281DRAFT_05275at 18.358 kb on + strand, within H281DRAFT_05275at 18.359 kb on - strand, within H281DRAFT_05275at 18.382 kb on + strand, within H281DRAFT_05275at 18.392 kb on + strand, within H281DRAFT_05275

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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16,103 - H281DRAFT_05273 0.30 -0.9
17,080 + +0.2
17,170 - H281DRAFT_05274 0.12 +0.5
17,446 - H281DRAFT_05274 0.47 +1.1
17,851 + +0.1
18,142 - H281DRAFT_05275 0.11 -0.3
18,342 + H281DRAFT_05275 0.32 +0.9
18,342 + H281DRAFT_05275 0.32 +0.3
18,342 + H281DRAFT_05275 0.32 -0.2
18,342 + H281DRAFT_05275 0.32 -0.7
18,358 + H281DRAFT_05275 0.34 +0.4
18,359 - H281DRAFT_05275 0.34 -1.5
18,382 + H281DRAFT_05275 0.37 -2.4
18,392 + H281DRAFT_05275 0.38 -1.2

Or see this region's nucleotide sequence