Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05159

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05158 and H281DRAFT_05159 overlap by 4 nucleotidesH281DRAFT_05159 and H281DRAFT_05160 are separated by 141 nucleotides H281DRAFT_05158: H281DRAFT_05158 - putative urate catabolism protein, at 112,021 to 112,971 _05158 H281DRAFT_05159: H281DRAFT_05159 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 112,968 to 113,489 _05159 H281DRAFT_05160: H281DRAFT_05160 - allantoicase, at 113,631 to 114,644 _05160 Position (kb) 112 113 114Strain fitness (log2 ratio) -2 -1 0 1 2at 111.996 kb on - strandat 112.039 kb on + strandat 112.040 kb on - strandat 112.040 kb on - strandat 112.271 kb on + strand, within H281DRAFT_05158at 112.456 kb on - strand, within H281DRAFT_05158at 112.586 kb on - strand, within H281DRAFT_05158at 112.589 kb on - strand, within H281DRAFT_05158at 112.736 kb on - strandat 112.762 kb on + strand, within H281DRAFT_05158at 112.867 kb on - strand, within H281DRAFT_05158at 113.129 kb on + strand, within H281DRAFT_05159at 113.129 kb on + strandat 113.406 kb on - strand, within H281DRAFT_05159at 113.423 kb on - strand, within H281DRAFT_05159at 113.562 kb on - strandat 113.796 kb on + strand, within H281DRAFT_05160at 114.026 kb on + strand, within H281DRAFT_05160at 114.051 kb on + strand, within H281DRAFT_05160at 114.081 kb on - strand, within H281DRAFT_05160at 114.081 kb on - strand, within H281DRAFT_05160at 114.081 kb on - strand, within H281DRAFT_05160at 114.081 kb on - strandat 114.136 kb on - strand, within H281DRAFT_05160at 114.231 kb on - strand, within H281DRAFT_05160at 114.409 kb on - strand, within H281DRAFT_05160at 114.409 kb on - strand, within H281DRAFT_05160at 114.438 kb on + strand, within H281DRAFT_05160at 114.439 kb on - strand, within H281DRAFT_05160

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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111,996 - -2.5
112,039 + -1.5
112,040 - +1.9
112,040 - +0.7
112,271 + H281DRAFT_05158 0.26 -1.5
112,456 - H281DRAFT_05158 0.46 +1.4
112,586 - H281DRAFT_05158 0.59 +0.5
112,589 - H281DRAFT_05158 0.60 +2.2
112,736 - -1.0
112,762 + H281DRAFT_05158 0.78 +0.4
112,867 - H281DRAFT_05158 0.89 +1.1
113,129 + H281DRAFT_05159 0.31 +1.2
113,129 + +1.3
113,406 - H281DRAFT_05159 0.84 +0.8
113,423 - H281DRAFT_05159 0.87 +0.4
113,562 - -0.0
113,796 + H281DRAFT_05160 0.16 +0.3
114,026 + H281DRAFT_05160 0.39 -0.7
114,051 + H281DRAFT_05160 0.41 -0.4
114,081 - H281DRAFT_05160 0.44 -0.8
114,081 - H281DRAFT_05160 0.44 -1.5
114,081 - H281DRAFT_05160 0.44 +0.3
114,081 - +0.9
114,136 - H281DRAFT_05160 0.50 +0.5
114,231 - H281DRAFT_05160 0.59 +0.6
114,409 - H281DRAFT_05160 0.77 -0.2
114,409 - H281DRAFT_05160 0.77 +0.2
114,438 + H281DRAFT_05160 0.80 +0.2
114,439 - H281DRAFT_05160 0.80 +0.1

Or see this region's nucleotide sequence