Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05021 and H281DRAFT_05022 are separated by 180 nucleotides H281DRAFT_05022 and H281DRAFT_05023 are separated by 116 nucleotides H281DRAFT_05023 and H281DRAFT_05024 are separated by 413 nucleotides H281DRAFT_05024 and H281DRAFT_05025 are separated by 103 nucleotides
H281DRAFT_05021: H281DRAFT_05021 - Response regulator, at 206,267 to 206,644
_05021
H281DRAFT_05022: H281DRAFT_05022 - two component transcriptional regulator, LuxR family, at 206,825 to 207,511
_05022
H281DRAFT_05023: H281DRAFT_05023 - Predicted ATPase, at 207,628 to 212,706
_05023
H281DRAFT_05024: H281DRAFT_05024 - hypothetical protein, at 213,120 to 213,452
_05024
H281DRAFT_05025: H281DRAFT_05025 - Pimeloyl-ACP methyl ester carboxylesterase, at 213,556 to 214,335
_05025
Position (kb) 207
208
209
210
211
212
213 Strain fitness (log2 ratio) -2
-1
0
1 at 206.711 kb on - strand at 206.738 kb on - strand at 206.738 kb on - strand at 206.741 kb on + strand at 206.820 kb on + strand at 206.843 kb on + strand at 207.203 kb on + strand, within H281DRAFT_05022 at 207.203 kb on + strand, within H281DRAFT_05022 at 207.629 kb on + strand at 207.629 kb on + strand at 207.630 kb on - strand at 208.248 kb on + strand, within H281DRAFT_05023 at 208.249 kb on - strand, within H281DRAFT_05023 at 208.512 kb on - strand, within H281DRAFT_05023 at 208.555 kb on + strand, within H281DRAFT_05023 at 208.586 kb on + strand, within H281DRAFT_05023 at 208.586 kb on + strand, within H281DRAFT_05023 at 208.587 kb on - strand, within H281DRAFT_05023 at 208.601 kb on + strand, within H281DRAFT_05023 at 208.602 kb on - strand, within H281DRAFT_05023 at 208.763 kb on - strand, within H281DRAFT_05023 at 209.150 kb on + strand, within H281DRAFT_05023 at 209.466 kb on - strand, within H281DRAFT_05023 at 209.735 kb on - strand, within H281DRAFT_05023 at 209.822 kb on + strand, within H281DRAFT_05023 at 209.823 kb on - strand, within H281DRAFT_05023 at 209.842 kb on + strand, within H281DRAFT_05023 at 211.112 kb on - strand, within H281DRAFT_05023 at 212.205 kb on - strand at 212.205 kb on - strand at 212.806 kb on - strand at 212.831 kb on - strand at 212.831 kb on - strand at 213.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 206,711 - -0.8 206,738 - +0.2 206,738 - +0.3 206,741 + +0.7 206,820 + +0.1 206,843 + +0.2 207,203 + H281DRAFT_05022 0.55 -1.0 207,203 + H281DRAFT_05022 0.55 -0.4 207,629 + +0.3 207,629 + +0.6 207,630 - +1.0 208,248 + H281DRAFT_05023 0.12 +0.2 208,249 - H281DRAFT_05023 0.12 -0.7 208,512 - H281DRAFT_05023 0.17 +0.4 208,555 + H281DRAFT_05023 0.18 -0.3 208,586 + H281DRAFT_05023 0.19 +1.5 208,586 + H281DRAFT_05023 0.19 +0.0 208,587 - H281DRAFT_05023 0.19 -0.2 208,601 + H281DRAFT_05023 0.19 +0.6 208,602 - H281DRAFT_05023 0.19 -0.1 208,763 - H281DRAFT_05023 0.22 +0.7 209,150 + H281DRAFT_05023 0.30 +0.8 209,466 - H281DRAFT_05023 0.36 +0.0 209,735 - H281DRAFT_05023 0.41 +0.6 209,822 + H281DRAFT_05023 0.43 -2.0 209,823 - H281DRAFT_05023 0.43 -2.4 209,842 + H281DRAFT_05023 0.44 +0.3 211,112 - H281DRAFT_05023 0.69 -1.6 212,205 - +0.3 212,205 - -1.0 212,806 - +1.1 212,831 - +1.7 212,831 - -2.2 213,538 - +0.9
Or see this region's nucleotide sequence