Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05018 and H281DRAFT_05019 are separated by 264 nucleotides H281DRAFT_05019 and H281DRAFT_05020 are separated by 168 nucleotides
H281DRAFT_05018: H281DRAFT_05018 - TIGR03118 family protein, at 201,748 to 202,857
_05018
H281DRAFT_05019: H281DRAFT_05019 - hypothetical protein, at 203,122 to 204,849
_05019
H281DRAFT_05020: H281DRAFT_05020 - Signal transduction histidine kinase, at 205,018 to 206,103
_05020
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1
2 at 202.301 kb on + strand, within H281DRAFT_05018 at 202.302 kb on - strand, within H281DRAFT_05018 at 202.347 kb on - strand, within H281DRAFT_05018 at 202.817 kb on - strand at 202.837 kb on + strand at 202.851 kb on - strand at 202.851 kb on - strand at 202.891 kb on - strand at 203.026 kb on + strand at 203.044 kb on - strand at 203.044 kb on - strand at 203.072 kb on + strand at 203.251 kb on + strand at 203.846 kb on + strand, within H281DRAFT_05019 at 203.863 kb on + strand, within H281DRAFT_05019 at 203.863 kb on + strand, within H281DRAFT_05019 at 204.046 kb on + strand, within H281DRAFT_05019 at 204.173 kb on + strand, within H281DRAFT_05019 at 204.315 kb on + strand, within H281DRAFT_05019 at 204.354 kb on + strand, within H281DRAFT_05019 at 204.948 kb on - strand at 205.107 kb on + strand at 205.811 kb on + strand, within H281DRAFT_05020
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 202,301 + H281DRAFT_05018 0.50 -2.5 202,302 - H281DRAFT_05018 0.50 +1.4 202,347 - H281DRAFT_05018 0.54 -0.1 202,817 - +0.0 202,837 + +0.2 202,851 - -1.4 202,851 - +0.5 202,891 - +2.0 203,026 + +0.1 203,044 - +0.9 203,044 - -1.8 203,072 + -0.8 203,251 + +0.2 203,846 + H281DRAFT_05019 0.42 -0.6 203,863 + H281DRAFT_05019 0.43 -2.7 203,863 + H281DRAFT_05019 0.43 +0.8 204,046 + H281DRAFT_05019 0.53 +0.2 204,173 + H281DRAFT_05019 0.61 +0.9 204,315 + H281DRAFT_05019 0.69 +0.2 204,354 + H281DRAFT_05019 0.71 +1.0 204,948 - -0.6 205,107 + +0.7 205,811 + H281DRAFT_05020 0.73 +0.2
Or see this region's nucleotide sequence