Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04936 and H281DRAFT_04937 are separated by 16 nucleotides H281DRAFT_04937 and H281DRAFT_04938 overlap by 35 nucleotides
H281DRAFT_04936: H281DRAFT_04936 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 118,810 to 120,285
_04936
H281DRAFT_04937: H281DRAFT_04937 - MFS transporter, DHA2 family, multidrug resistance protein, at 120,302 to 121,930
_04937
H281DRAFT_04938: H281DRAFT_04938 - membrane fusion protein, multidrug efflux system, at 121,896 to 123,038
_04938
Position (kb) 120
121
122 Strain fitness (log2 ratio) -1
0
1 at 119.837 kb on + strand, within H281DRAFT_04936 at 119.837 kb on + strand, within H281DRAFT_04936 at 120.021 kb on + strand, within H281DRAFT_04936 at 120.399 kb on + strand at 120.415 kb on - strand at 120.663 kb on + strand, within H281DRAFT_04937 at 121.715 kb on - strand, within H281DRAFT_04937 at 122.235 kb on - strand, within H281DRAFT_04938 at 122.241 kb on + strand, within H281DRAFT_04938 at 122.673 kb on + strand, within H281DRAFT_04938 at 122.674 kb on - strand, within H281DRAFT_04938 at 122.674 kb on - strand, within H281DRAFT_04938 at 122.792 kb on - strand, within H281DRAFT_04938 at 122.851 kb on + strand, within H281DRAFT_04938
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 119,837 + H281DRAFT_04936 0.70 +0.6 119,837 + H281DRAFT_04936 0.70 +1.0 120,021 + H281DRAFT_04936 0.82 +1.1 120,399 + +0.5 120,415 - +0.6 120,663 + H281DRAFT_04937 0.22 -0.5 121,715 - H281DRAFT_04937 0.87 -0.1 122,235 - H281DRAFT_04938 0.30 -0.1 122,241 + H281DRAFT_04938 0.30 +1.4 122,673 + H281DRAFT_04938 0.68 -0.9 122,674 - H281DRAFT_04938 0.68 -0.8 122,674 - H281DRAFT_04938 0.68 +0.2 122,792 - H281DRAFT_04938 0.78 +0.4 122,851 + H281DRAFT_04938 0.84 +0.6
Or see this region's nucleotide sequence