Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04586

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04584 and H281DRAFT_04585 are separated by 260 nucleotidesH281DRAFT_04585 and H281DRAFT_04586 are separated by 48 nucleotidesH281DRAFT_04586 and H281DRAFT_04587 are separated by 10 nucleotides H281DRAFT_04584: H281DRAFT_04584 - transcriptional regulator, AlpA family, at 317,038 to 317,562 _04584 H281DRAFT_04585: H281DRAFT_04585 - hypothetical protein, at 317,823 to 318,248 _04585 H281DRAFT_04586: H281DRAFT_04586 - hypothetical protein, at 318,297 to 319,493 _04586 H281DRAFT_04587: H281DRAFT_04587 - hypothetical protein, at 319,504 to 320,631 _04587 Position (kb) 318 319 320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 317.443 kb on + strand, within H281DRAFT_04584at 317.462 kb on + strandat 317.630 kb on + strandat 317.630 kb on + strandat 317.631 kb on - strandat 317.637 kb on + strandat 317.638 kb on - strandat 317.638 kb on - strandat 317.638 kb on - strandat 317.695 kb on + strandat 317.839 kb on + strandat 317.839 kb on + strandat 317.840 kb on - strandat 318.062 kb on - strand, within H281DRAFT_04585at 318.144 kb on - strand, within H281DRAFT_04585at 318.246 kb on + strandat 318.292 kb on + strandat 318.292 kb on + strandat 318.292 kb on + strandat 318.293 kb on - strandat 318.293 kb on - strandat 318.293 kb on - strandat 318.293 kb on - strandat 318.296 kb on + strandat 318.296 kb on + strandat 318.296 kb on + strandat 318.297 kb on - strandat 318.309 kb on + strandat 318.309 kb on + strandat 318.391 kb on + strandat 318.392 kb on - strandat 318.401 kb on + strandat 318.401 kb on + strandat 318.402 kb on - strandat 318.487 kb on - strand, within H281DRAFT_04586at 318.521 kb on + strand, within H281DRAFT_04586at 318.521 kb on + strand, within H281DRAFT_04586at 318.521 kb on + strand, within H281DRAFT_04586at 318.521 kb on + strand, within H281DRAFT_04586at 318.521 kb on + strand, within H281DRAFT_04586at 318.522 kb on - strand, within H281DRAFT_04586at 318.562 kb on + strand, within H281DRAFT_04586at 318.607 kb on - strand, within H281DRAFT_04586at 318.631 kb on - strand, within H281DRAFT_04586at 318.634 kb on - strand, within H281DRAFT_04586at 318.634 kb on - strand, within H281DRAFT_04586at 318.747 kb on + strand, within H281DRAFT_04586at 318.747 kb on + strand, within H281DRAFT_04586at 318.747 kb on + strand, within H281DRAFT_04586at 318.748 kb on - strand, within H281DRAFT_04586at 318.748 kb on - strand, within H281DRAFT_04586at 318.748 kb on - strand, within H281DRAFT_04586at 318.887 kb on + strand, within H281DRAFT_04586at 318.887 kb on + strand, within H281DRAFT_04586at 318.888 kb on - strand, within H281DRAFT_04586at 318.952 kb on + strand, within H281DRAFT_04586at 318.953 kb on - strand, within H281DRAFT_04586at 318.953 kb on - strand, within H281DRAFT_04586at 318.953 kb on - strand, within H281DRAFT_04586at 318.953 kb on - strand, within H281DRAFT_04586at 319.002 kb on + strand, within H281DRAFT_04586at 319.002 kb on + strand, within H281DRAFT_04586at 319.003 kb on - strand, within H281DRAFT_04586at 319.011 kb on + strand, within H281DRAFT_04586at 319.012 kb on - strand, within H281DRAFT_04586at 319.012 kb on - strand, within H281DRAFT_04586at 319.012 kb on - strand, within H281DRAFT_04586at 319.121 kb on - strand, within H281DRAFT_04586at 319.295 kb on + strand, within H281DRAFT_04586at 319.295 kb on + strand, within H281DRAFT_04586at 319.295 kb on + strand, within H281DRAFT_04586at 319.296 kb on - strand, within H281DRAFT_04586at 319.337 kb on - strand, within H281DRAFT_04586at 319.407 kb on + strandat 319.714 kb on - strand, within H281DRAFT_04587at 319.763 kb on - strand, within H281DRAFT_04587at 319.898 kb on - strand, within H281DRAFT_04587at 319.918 kb on - strand, within H281DRAFT_04587at 319.959 kb on + strand, within H281DRAFT_04587at 319.997 kb on - strand, within H281DRAFT_04587at 319.997 kb on - strand, within H281DRAFT_04587at 320.192 kb on - strand, within H281DRAFT_04587at 320.260 kb on + strand, within H281DRAFT_04587at 320.369 kb on - strand, within H281DRAFT_04587at 320.369 kb on - strand, within H281DRAFT_04587at 320.369 kb on - strand, within H281DRAFT_04587at 320.369 kb on - strand, within H281DRAFT_04587at 320.438 kb on + strand, within H281DRAFT_04587at 320.438 kb on + strand, within H281DRAFT_04587at 320.438 kb on + strand, within H281DRAFT_04587at 320.439 kb on - strand, within H281DRAFT_04587

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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317,443 + H281DRAFT_04584 0.77 +1.0
317,462 + +2.6
317,630 + -0.8
317,630 + -1.7
317,631 - -1.2
317,637 + -0.7
317,638 - -0.9
317,638 - +1.2
317,638 - +0.5
317,695 + -0.7
317,839 + -3.0
317,839 + -1.1
317,840 - -0.5
318,062 - H281DRAFT_04585 0.56 -3.3
318,144 - H281DRAFT_04585 0.75 -0.5
318,246 + -0.2
318,292 + +0.6
318,292 + +0.8
318,292 + -0.2
318,293 - +1.1
318,293 - +0.0
318,293 - -2.6
318,293 - +1.7
318,296 + -0.3
318,296 + -0.3
318,296 + +0.4
318,297 - +0.8
318,309 + +1.4
318,309 + -0.4
318,391 + +1.0
318,392 - +0.0
318,401 + +0.0
318,401 + +0.3
318,402 - +1.2
318,487 - H281DRAFT_04586 0.16 +0.1
318,521 + H281DRAFT_04586 0.19 -0.1
318,521 + H281DRAFT_04586 0.19 +0.9
318,521 + H281DRAFT_04586 0.19 +0.6
318,521 + H281DRAFT_04586 0.19 +0.0
318,521 + H281DRAFT_04586 0.19 +0.9
318,522 - H281DRAFT_04586 0.19 -1.2
318,562 + H281DRAFT_04586 0.22 +1.8
318,607 - H281DRAFT_04586 0.26 -0.1
318,631 - H281DRAFT_04586 0.28 +0.9
318,634 - H281DRAFT_04586 0.28 +0.3
318,634 - H281DRAFT_04586 0.28 -0.2
318,747 + H281DRAFT_04586 0.38 -0.1
318,747 + H281DRAFT_04586 0.38 -0.0
318,747 + H281DRAFT_04586 0.38 +0.8
318,748 - H281DRAFT_04586 0.38 +0.9
318,748 - H281DRAFT_04586 0.38 +0.0
318,748 - H281DRAFT_04586 0.38 +0.5
318,887 + H281DRAFT_04586 0.49 +0.5
318,887 + H281DRAFT_04586 0.49 +0.9
318,888 - H281DRAFT_04586 0.49 +2.0
318,952 + H281DRAFT_04586 0.55 -0.9
318,953 - H281DRAFT_04586 0.55 +0.6
318,953 - H281DRAFT_04586 0.55 +0.4
318,953 - H281DRAFT_04586 0.55 -0.7
318,953 - H281DRAFT_04586 0.55 +1.6
319,002 + H281DRAFT_04586 0.59 +0.9
319,002 + H281DRAFT_04586 0.59 -0.4
319,003 - H281DRAFT_04586 0.59 +0.5
319,011 + H281DRAFT_04586 0.60 +0.3
319,012 - H281DRAFT_04586 0.60 +0.4
319,012 - H281DRAFT_04586 0.60 +0.3
319,012 - H281DRAFT_04586 0.60 +1.2
319,121 - H281DRAFT_04586 0.69 -0.3
319,295 + H281DRAFT_04586 0.83 -0.2
319,295 + H281DRAFT_04586 0.83 +0.2
319,295 + H281DRAFT_04586 0.83 -0.1
319,296 - H281DRAFT_04586 0.83 +0.4
319,337 - H281DRAFT_04586 0.87 +0.5
319,407 + +2.6
319,714 - H281DRAFT_04587 0.19 +0.3
319,763 - H281DRAFT_04587 0.23 +0.9
319,898 - H281DRAFT_04587 0.35 +0.6
319,918 - H281DRAFT_04587 0.37 -0.7
319,959 + H281DRAFT_04587 0.40 -0.2
319,997 - H281DRAFT_04587 0.44 +0.9
319,997 - H281DRAFT_04587 0.44 +0.6
320,192 - H281DRAFT_04587 0.61 -0.4
320,260 + H281DRAFT_04587 0.67 +0.3
320,369 - H281DRAFT_04587 0.77 +0.3
320,369 - H281DRAFT_04587 0.77 -0.7
320,369 - H281DRAFT_04587 0.77 +0.9
320,369 - H281DRAFT_04587 0.77 -2.6
320,438 + H281DRAFT_04587 0.83 +0.6
320,438 + H281DRAFT_04587 0.83 +0.5
320,438 + H281DRAFT_04587 0.83 +0.4
320,439 - H281DRAFT_04587 0.83 +0.9

Or see this region's nucleotide sequence