Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04458 and H281DRAFT_04459 overlap by 4 nucleotides H281DRAFT_04459 and H281DRAFT_04460 are separated by 63 nucleotides H281DRAFT_04460 and H281DRAFT_04461 are separated by 13 nucleotides
H281DRAFT_04458: H281DRAFT_04458 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, at 179,908 to 181,893
_04458
H281DRAFT_04459: H281DRAFT_04459 - 5-dehydro-2-deoxygluconokinase, at 181,890 to 183,938
_04459
H281DRAFT_04460: H281DRAFT_04460 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 184,002 to 184,841
_04460
H281DRAFT_04461: H281DRAFT_04461 - monosaccharide ABC transporter membrane protein, CUT2 family, at 184,855 to 186,027
_04461
Position (kb) 181
182
183
184 Strain fitness (log2 ratio) -1
0
1
2
3 at 181.673 kb on + strand, within H281DRAFT_04458 at 181.876 kb on + strand at 181.876 kb on + strand at 181.877 kb on - strand at 182.176 kb on + strand, within H281DRAFT_04459 at 182.258 kb on - strand, within H281DRAFT_04459 at 182.270 kb on + strand, within H281DRAFT_04459 at 182.270 kb on + strand, within H281DRAFT_04459 at 182.270 kb on + strand, within H281DRAFT_04459 at 182.272 kb on + strand, within H281DRAFT_04459 at 182.273 kb on - strand, within H281DRAFT_04459 at 182.273 kb on - strand, within H281DRAFT_04459 at 182.852 kb on + strand, within H281DRAFT_04459 at 183.627 kb on + strand, within H281DRAFT_04459 at 184.532 kb on - strand, within H281DRAFT_04460 at 184.883 kb on + strand at 184.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 181,673 + H281DRAFT_04458 0.89 +1.4 181,876 + +0.1 181,876 + -0.1 181,877 - +3.6 182,176 + H281DRAFT_04459 0.14 +0.1 182,258 - H281DRAFT_04459 0.18 -0.4 182,270 + H281DRAFT_04459 0.19 +1.0 182,270 + H281DRAFT_04459 0.19 +0.3 182,270 + H281DRAFT_04459 0.19 +0.6 182,272 + H281DRAFT_04459 0.19 -1.2 182,273 - H281DRAFT_04459 0.19 -1.3 182,273 - H281DRAFT_04459 0.19 -1.0 182,852 + H281DRAFT_04459 0.47 +0.3 183,627 + H281DRAFT_04459 0.85 -0.2 184,532 - H281DRAFT_04460 0.63 +0.2 184,883 + +0.1 184,928 - +0.6
Or see this region's nucleotide sequence