Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04309 and H281DRAFT_04310 are separated by 176 nucleotides H281DRAFT_04310 and H281DRAFT_04311 are separated by 248 nucleotides
H281DRAFT_04309: H281DRAFT_04309 - transcriptional regulator, ArsR family, at 25,984 to 26,697
_04309
H281DRAFT_04310: H281DRAFT_04310 - hypothetical protein, at 26,874 to 27,017
_04310
H281DRAFT_04311: H281DRAFT_04311 - Predicted arabinose efflux permease, MFS family, at 27,266 to 28,549
_04311
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.916 kb on - strand at 26.296 kb on + strand, within H281DRAFT_04309 at 26.317 kb on - strand, within H281DRAFT_04309 at 26.317 kb on - strand, within H281DRAFT_04309 at 26.340 kb on - strand, within H281DRAFT_04309 at 26.710 kb on + strand at 26.711 kb on - strand at 26.743 kb on + strand at 26.743 kb on + strand at 26.743 kb on + strand at 26.744 kb on - strand at 26.744 kb on - strand at 26.839 kb on + strand at 26.839 kb on + strand at 26.839 kb on + strand at 26.840 kb on - strand at 26.865 kb on + strand at 26.866 kb on - strand at 26.979 kb on + strand, within H281DRAFT_04310 at 26.980 kb on - strand, within H281DRAFT_04310 at 26.980 kb on - strand, within H281DRAFT_04310 at 27.172 kb on + strand at 27.172 kb on + strand at 27.173 kb on - strand at 27.173 kb on - strand at 27.173 kb on - strand at 27.401 kb on + strand, within H281DRAFT_04311 at 27.402 kb on - strand, within H281DRAFT_04311 at 27.402 kb on - strand, within H281DRAFT_04311 at 27.402 kb on - strand, within H281DRAFT_04311 at 27.402 kb on - strand, within H281DRAFT_04311 at 27.449 kb on + strand, within H281DRAFT_04311 at 27.450 kb on - strand, within H281DRAFT_04311 at 27.675 kb on + strand, within H281DRAFT_04311 at 27.695 kb on + strand, within H281DRAFT_04311 at 27.906 kb on - strand, within H281DRAFT_04311
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 25,916 - +0.4 26,296 + H281DRAFT_04309 0.44 -0.4 26,317 - H281DRAFT_04309 0.47 +0.0 26,317 - H281DRAFT_04309 0.47 -0.7 26,340 - H281DRAFT_04309 0.50 +0.5 26,710 + +0.7 26,711 - +0.8 26,743 + +0.2 26,743 + +0.1 26,743 + +0.2 26,744 - -1.4 26,744 - -2.3 26,839 + -0.1 26,839 + -0.0 26,839 + -0.4 26,840 - +1.0 26,865 + -0.7 26,866 - -0.3 26,979 + H281DRAFT_04310 0.73 +0.8 26,980 - H281DRAFT_04310 0.74 +0.9 26,980 - H281DRAFT_04310 0.74 +0.8 27,172 + +0.9 27,172 + +0.7 27,173 - -0.2 27,173 - -1.5 27,173 - -1.8 27,401 + H281DRAFT_04311 0.11 +1.1 27,402 - H281DRAFT_04311 0.11 +0.2 27,402 - H281DRAFT_04311 0.11 +1.3 27,402 - H281DRAFT_04311 0.11 -0.4 27,402 - H281DRAFT_04311 0.11 +0.7 27,449 + H281DRAFT_04311 0.14 +0.4 27,450 - H281DRAFT_04311 0.14 +0.1 27,675 + H281DRAFT_04311 0.32 -0.5 27,695 + H281DRAFT_04311 0.33 +2.3 27,906 - H281DRAFT_04311 0.50 -0.9
Or see this region's nucleotide sequence