Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04244

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04243 and H281DRAFT_04244 are separated by 110 nucleotidesH281DRAFT_04244 and H281DRAFT_04245 are separated by 83 nucleotides H281DRAFT_04243: H281DRAFT_04243 - magnesium and cobalt transporter, at 361,227 to 362,258 _04243 H281DRAFT_04244: H281DRAFT_04244 - apolipoprotein N-acyltransferase, at 362,369 to 364,087 _04244 H281DRAFT_04245: H281DRAFT_04245 - putative metalloprotease, at 364,171 to 364,932 _04245 Position (kb) 362 363 364 365Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 361.377 kb on + strand, within H281DRAFT_04243at 361.377 kb on + strand, within H281DRAFT_04243at 361.377 kb on + strand, within H281DRAFT_04243at 361.549 kb on + strand, within H281DRAFT_04243at 361.647 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strandat 361.740 kb on + strand, within H281DRAFT_04243at 361.901 kb on + strand, within H281DRAFT_04243at 362.459 kb on + strandat 363.959 kb on - strandat 364.085 kb on + strandat 364.085 kb on + strandat 364.085 kb on + strandat 364.085 kb on + strandat 364.085 kb on + strandat 364.085 kb on + strandat 364.086 kb on - strandat 364.151 kb on - strandat 364.151 kb on - strandat 364.151 kb on - strandat 364.188 kb on + strandat 364.242 kb on + strandat 364.242 kb on + strandat 364.243 kb on - strandat 364.261 kb on + strand, within H281DRAFT_04245at 364.261 kb on + strand, within H281DRAFT_04245at 364.261 kb on + strand, within H281DRAFT_04245at 364.337 kb on + strand, within H281DRAFT_04245at 364.338 kb on - strand, within H281DRAFT_04245at 364.338 kb on - strand, within H281DRAFT_04245at 364.381 kb on - strand, within H281DRAFT_04245at 364.479 kb on - strand, within H281DRAFT_04245at 364.503 kb on + strand, within H281DRAFT_04245at 364.503 kb on + strand, within H281DRAFT_04245at 364.503 kb on + strand, within H281DRAFT_04245at 364.541 kb on - strand, within H281DRAFT_04245at 364.587 kb on - strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.649 kb on + strand, within H281DRAFT_04245at 364.649 kb on + strand, within H281DRAFT_04245at 364.649 kb on + strand, within H281DRAFT_04245at 364.703 kb on - strand, within H281DRAFT_04245at 364.716 kb on - strand, within H281DRAFT_04245at 364.722 kb on + strand, within H281DRAFT_04245at 364.722 kb on + strand, within H281DRAFT_04245at 364.908 kb on + strandat 364.909 kb on - strandat 364.951 kb on + strandat 364.952 kb on - strandat 364.972 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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361,377 + H281DRAFT_04243 0.15 +0.0
361,377 + H281DRAFT_04243 0.15 -0.6
361,377 + H281DRAFT_04243 0.15 -0.5
361,549 + H281DRAFT_04243 0.31 -2.2
361,647 + H281DRAFT_04243 0.41 -0.4
361,683 + H281DRAFT_04243 0.44 -3.2
361,683 + H281DRAFT_04243 0.44 -0.8
361,683 + H281DRAFT_04243 0.44 +0.7
361,683 + +0.0
361,740 + H281DRAFT_04243 0.50 -0.3
361,901 + H281DRAFT_04243 0.65 -0.1
362,459 + +0.6
363,959 - -0.3
364,085 + +0.8
364,085 + +0.0
364,085 + +0.0
364,085 + -0.3
364,085 + +0.7
364,085 + -0.5
364,086 - +0.3
364,151 - -0.5
364,151 - +0.0
364,151 - -0.0
364,188 + -0.4
364,242 + -0.4
364,242 + +0.5
364,243 - +1.0
364,261 + H281DRAFT_04245 0.12 -0.9
364,261 + H281DRAFT_04245 0.12 +0.4
364,261 + H281DRAFT_04245 0.12 -0.5
364,337 + H281DRAFT_04245 0.22 -0.1
364,338 - H281DRAFT_04245 0.22 +0.2
364,338 - H281DRAFT_04245 0.22 -0.7
364,381 - H281DRAFT_04245 0.28 -0.0
364,479 - H281DRAFT_04245 0.40 +0.2
364,503 + H281DRAFT_04245 0.44 -0.4
364,503 + H281DRAFT_04245 0.44 -0.9
364,503 + H281DRAFT_04245 0.44 +0.7
364,541 - H281DRAFT_04245 0.49 -2.5
364,587 - H281DRAFT_04245 0.55 -0.5
364,640 + H281DRAFT_04245 0.62 -1.1
364,640 + H281DRAFT_04245 0.62 -0.0
364,640 + H281DRAFT_04245 0.62 +0.2
364,640 + H281DRAFT_04245 0.62 +1.0
364,641 - H281DRAFT_04245 0.62 +0.3
364,641 - H281DRAFT_04245 0.62 -0.5
364,641 - H281DRAFT_04245 0.62 -1.4
364,641 - H281DRAFT_04245 0.62 +0.3
364,641 - H281DRAFT_04245 0.62 -0.6
364,641 - H281DRAFT_04245 0.62 +0.4
364,641 - H281DRAFT_04245 0.62 -0.4
364,649 + H281DRAFT_04245 0.63 -0.4
364,649 + H281DRAFT_04245 0.63 -2.3
364,649 + H281DRAFT_04245 0.63 -2.3
364,703 - H281DRAFT_04245 0.70 -0.2
364,716 - H281DRAFT_04245 0.72 +0.3
364,722 + H281DRAFT_04245 0.72 -1.1
364,722 + H281DRAFT_04245 0.72 +0.6
364,908 + -3.2
364,909 - +0.0
364,951 + -0.7
364,952 - +0.4
364,972 + -5.0

Or see this region's nucleotide sequence