Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04221

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04220 and H281DRAFT_04221 are separated by 126 nucleotidesH281DRAFT_04221 and H281DRAFT_04222 are separated by 217 nucleotides H281DRAFT_04220: H281DRAFT_04220 - Cytochrome c, mono- and diheme variants, at 338,958 to 340,256 _04220 H281DRAFT_04221: H281DRAFT_04221 - hemolysin III, at 340,383 to 341,003 _04221 H281DRAFT_04222: H281DRAFT_04222 - ATP-dependent RNA helicase RhlE, at 341,221 to 342,753 _04222 Position (kb) 340 341 342Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 339.504 kb on + strand, within H281DRAFT_04220at 339.505 kb on - strand, within H281DRAFT_04220at 339.663 kb on + strand, within H281DRAFT_04220at 339.807 kb on + strand, within H281DRAFT_04220at 339.807 kb on + strand, within H281DRAFT_04220at 339.808 kb on - strand, within H281DRAFT_04220at 339.808 kb on - strand, within H281DRAFT_04220at 339.945 kb on + strand, within H281DRAFT_04220at 340.156 kb on + strandat 340.156 kb on + strandat 340.157 kb on - strandat 340.173 kb on + strandat 340.173 kb on + strandat 340.173 kb on + strandat 340.173 kb on + strandat 340.173 kb on + strandat 340.181 kb on + strandat 340.254 kb on + strandat 340.255 kb on - strandat 340.413 kb on - strandat 340.491 kb on + strand, within H281DRAFT_04221at 340.491 kb on + strand, within H281DRAFT_04221at 340.491 kb on + strand, within H281DRAFT_04221at 340.491 kb on + strand, within H281DRAFT_04221at 340.491 kb on + strand, within H281DRAFT_04221at 340.492 kb on - strand, within H281DRAFT_04221at 340.492 kb on - strand, within H281DRAFT_04221at 340.492 kb on - strand, within H281DRAFT_04221at 340.515 kb on + strand, within H281DRAFT_04221at 340.515 kb on + strand, within H281DRAFT_04221at 340.515 kb on + strand, within H281DRAFT_04221at 340.539 kb on + strand, within H281DRAFT_04221at 340.539 kb on + strand, within H281DRAFT_04221at 340.539 kb on + strand, within H281DRAFT_04221at 340.540 kb on - strand, within H281DRAFT_04221at 340.540 kb on - strand, within H281DRAFT_04221at 340.544 kb on + strand, within H281DRAFT_04221at 340.544 kb on + strand, within H281DRAFT_04221at 340.558 kb on - strand, within H281DRAFT_04221at 340.558 kb on - strand, within H281DRAFT_04221at 340.558 kb on - strand, within H281DRAFT_04221at 340.581 kb on - strand, within H281DRAFT_04221at 340.621 kb on - strand, within H281DRAFT_04221at 340.641 kb on + strand, within H281DRAFT_04221at 340.641 kb on + strand, within H281DRAFT_04221at 340.641 kb on + strand, within H281DRAFT_04221at 340.642 kb on - strand, within H281DRAFT_04221at 340.779 kb on + strand, within H281DRAFT_04221at 340.779 kb on + strand, within H281DRAFT_04221at 340.780 kb on - strand, within H281DRAFT_04221at 340.780 kb on - strand, within H281DRAFT_04221at 340.780 kb on - strand, within H281DRAFT_04221at 340.780 kb on - strand, within H281DRAFT_04221at 340.780 kb on - strand, within H281DRAFT_04221at 340.878 kb on + strand, within H281DRAFT_04221at 340.878 kb on + strand, within H281DRAFT_04221at 340.879 kb on - strand, within H281DRAFT_04221at 340.879 kb on - strand, within H281DRAFT_04221at 340.879 kb on - strand, within H281DRAFT_04221at 340.879 kb on - strand, within H281DRAFT_04221at 340.893 kb on + strand, within H281DRAFT_04221at 340.894 kb on - strand, within H281DRAFT_04221at 340.933 kb on + strand, within H281DRAFT_04221at 340.934 kb on + strand, within H281DRAFT_04221at 340.935 kb on - strand, within H281DRAFT_04221at 340.935 kb on - strand, within H281DRAFT_04221at 340.935 kb on - strand, within H281DRAFT_04221at 340.951 kb on + strandat 341.029 kb on - strandat 341.220 kb on + strandat 341.267 kb on + strandat 341.268 kb on - strandat 341.268 kb on - strandat 341.527 kb on + strand, within H281DRAFT_04222at 341.527 kb on + strand, within H281DRAFT_04222at 341.528 kb on - strand, within H281DRAFT_04222at 341.528 kb on - strand, within H281DRAFT_04222at 341.643 kb on + strand, within H281DRAFT_04222at 341.643 kb on + strand, within H281DRAFT_04222at 341.644 kb on - strand, within H281DRAFT_04222at 341.644 kb on - strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.707 kb on - strand, within H281DRAFT_04222at 341.969 kb on + strand, within H281DRAFT_04222at 341.969 kb on + strand, within H281DRAFT_04222at 341.970 kb on - strand, within H281DRAFT_04222at 341.970 kb on - strand, within H281DRAFT_04222at 341.970 kb on - strand, within H281DRAFT_04222

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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339,504 + H281DRAFT_04220 0.42 -2.9
339,505 - H281DRAFT_04220 0.42 -0.7
339,663 + H281DRAFT_04220 0.54 -0.8
339,807 + H281DRAFT_04220 0.65 -1.3
339,807 + H281DRAFT_04220 0.65 -0.8
339,808 - H281DRAFT_04220 0.65 -0.4
339,808 - H281DRAFT_04220 0.65 -1.6
339,945 + H281DRAFT_04220 0.76 +0.6
340,156 + -1.9
340,156 + +1.0
340,157 - +0.9
340,173 + -1.1
340,173 + -0.1
340,173 + -0.1
340,173 + -1.0
340,173 + -0.1
340,181 + -0.7
340,254 + +0.2
340,255 - -0.8
340,413 - -4.5
340,491 + H281DRAFT_04221 0.17 +1.8
340,491 + H281DRAFT_04221 0.17 +0.1
340,491 + H281DRAFT_04221 0.17 +0.3
340,491 + H281DRAFT_04221 0.17 +0.2
340,491 + H281DRAFT_04221 0.17 -0.0
340,492 - H281DRAFT_04221 0.18 +1.1
340,492 - H281DRAFT_04221 0.18 +0.7
340,492 - H281DRAFT_04221 0.18 -1.5
340,515 + H281DRAFT_04221 0.21 +0.7
340,515 + H281DRAFT_04221 0.21 -0.2
340,515 + H281DRAFT_04221 0.21 +0.5
340,539 + H281DRAFT_04221 0.25 +1.1
340,539 + H281DRAFT_04221 0.25 -0.3
340,539 + H281DRAFT_04221 0.25 +0.3
340,540 - H281DRAFT_04221 0.25 +0.7
340,540 - H281DRAFT_04221 0.25 +0.4
340,544 + H281DRAFT_04221 0.26 +0.3
340,544 + H281DRAFT_04221 0.26 -0.6
340,558 - H281DRAFT_04221 0.28 +1.2
340,558 - H281DRAFT_04221 0.28 -1.1
340,558 - H281DRAFT_04221 0.28 -2.0
340,581 - H281DRAFT_04221 0.32 -0.1
340,621 - H281DRAFT_04221 0.38 +0.9
340,641 + H281DRAFT_04221 0.42 -0.9
340,641 + H281DRAFT_04221 0.42 +0.5
340,641 + H281DRAFT_04221 0.42 -0.4
340,642 - H281DRAFT_04221 0.42 +0.1
340,779 + H281DRAFT_04221 0.64 -2.3
340,779 + H281DRAFT_04221 0.64 +0.1
340,780 - H281DRAFT_04221 0.64 +0.5
340,780 - H281DRAFT_04221 0.64 +2.1
340,780 - H281DRAFT_04221 0.64 +0.7
340,780 - H281DRAFT_04221 0.64 -0.3
340,780 - H281DRAFT_04221 0.64 +0.2
340,878 + H281DRAFT_04221 0.80 +0.3
340,878 + H281DRAFT_04221 0.80 +0.9
340,879 - H281DRAFT_04221 0.80 -0.3
340,879 - H281DRAFT_04221 0.80 +0.0
340,879 - H281DRAFT_04221 0.80 +0.5
340,879 - H281DRAFT_04221 0.80 -1.0
340,893 + H281DRAFT_04221 0.82 -0.2
340,894 - H281DRAFT_04221 0.82 -0.4
340,933 + H281DRAFT_04221 0.89 -0.0
340,934 + H281DRAFT_04221 0.89 -0.2
340,935 - H281DRAFT_04221 0.89 -0.3
340,935 - H281DRAFT_04221 0.89 -0.7
340,935 - H281DRAFT_04221 0.89 -0.8
340,951 + -0.3
341,029 - -1.2
341,220 + +1.0
341,267 + +2.4
341,268 - +0.3
341,268 - -0.0
341,527 + H281DRAFT_04222 0.20 +1.2
341,527 + H281DRAFT_04222 0.20 -3.1
341,528 - H281DRAFT_04222 0.20 -1.6
341,528 - H281DRAFT_04222 0.20 +1.0
341,643 + H281DRAFT_04222 0.28 -0.7
341,643 + H281DRAFT_04222 0.28 +0.4
341,644 - H281DRAFT_04222 0.28 -0.1
341,644 - H281DRAFT_04222 0.28 +0.8
341,706 + H281DRAFT_04222 0.32 -0.5
341,706 + H281DRAFT_04222 0.32 -0.8
341,706 + H281DRAFT_04222 0.32 -2.1
341,706 + H281DRAFT_04222 0.32 -0.2
341,706 + H281DRAFT_04222 0.32 -1.0
341,706 + H281DRAFT_04222 0.32 +1.3
341,707 - H281DRAFT_04222 0.32 -0.5
341,969 + H281DRAFT_04222 0.49 +0.0
341,969 + H281DRAFT_04222 0.49 -0.7
341,970 - H281DRAFT_04222 0.49 +0.1
341,970 - H281DRAFT_04222 0.49 -0.0
341,970 - H281DRAFT_04222 0.49 -0.1

Or see this region's nucleotide sequence