Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02953 and H281DRAFT_02954 are separated by 445 nucleotides H281DRAFT_02954 and H281DRAFT_02955 are separated by 117 nucleotides H281DRAFT_02955 and H281DRAFT_02956 are separated by 1 nucleotides
H281DRAFT_02953: H281DRAFT_02953 - D-mannonate dehydratase (EC 4.2.1.8), at 567,649 to 568,710
_02953
H281DRAFT_02954: H281DRAFT_02954 - glyoxylase I family protein, at 569,156 to 569,569
_02954
H281DRAFT_02955: H281DRAFT_02955 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 569,687 to 570,274
_02955
H281DRAFT_02956: H281DRAFT_02956 - transcriptional regulator, GntR family, at 570,276 to 571,010
_02956
Position (kb) 569
570 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 568.178 kb on + strand, within H281DRAFT_02953 at 568.277 kb on - strand, within H281DRAFT_02953 at 568.403 kb on + strand, within H281DRAFT_02953 at 568.404 kb on - strand, within H281DRAFT_02953 at 568.614 kb on - strand at 568.658 kb on + strand at 568.659 kb on - strand at 568.659 kb on - strand at 568.894 kb on - strand at 568.920 kb on - strand at 568.943 kb on - strand at 569.145 kb on + strand at 569.251 kb on + strand, within H281DRAFT_02954 at 569.251 kb on + strand, within H281DRAFT_02954 at 569.252 kb on - strand, within H281DRAFT_02954 at 569.313 kb on - strand, within H281DRAFT_02954 at 569.313 kb on - strand, within H281DRAFT_02954 at 569.313 kb on - strand, within H281DRAFT_02954 at 569.432 kb on - strand, within H281DRAFT_02954 at 569.445 kb on + strand, within H281DRAFT_02954 at 569.445 kb on + strand, within H281DRAFT_02954 at 569.467 kb on - strand, within H281DRAFT_02954 at 569.481 kb on - strand, within H281DRAFT_02954 at 569.572 kb on + strand at 569.598 kb on + strand at 569.718 kb on + strand at 569.719 kb on - strand at 570.098 kb on - strand, within H281DRAFT_02955
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 568,178 + H281DRAFT_02953 0.50 -4.5 568,277 - H281DRAFT_02953 0.59 -2.3 568,403 + H281DRAFT_02953 0.71 -0.4 568,404 - H281DRAFT_02953 0.71 -0.3 568,614 - -0.4 568,658 + +0.8 568,659 - -0.1 568,659 - +0.0 568,894 - -0.4 568,920 - -0.9 568,943 - -0.0 569,145 + -0.5 569,251 + H281DRAFT_02954 0.23 -0.4 569,251 + H281DRAFT_02954 0.23 +0.0 569,252 - H281DRAFT_02954 0.23 -0.5 569,313 - H281DRAFT_02954 0.38 +0.1 569,313 - H281DRAFT_02954 0.38 -0.6 569,313 - H281DRAFT_02954 0.38 +0.0 569,432 - H281DRAFT_02954 0.67 +0.1 569,445 + H281DRAFT_02954 0.70 +0.2 569,445 + H281DRAFT_02954 0.70 +0.9 569,467 - H281DRAFT_02954 0.75 -0.2 569,481 - H281DRAFT_02954 0.79 -0.0 569,572 + +1.5 569,598 + +0.2 569,718 + -0.7 569,719 - +0.8 570,098 - H281DRAFT_02955 0.70 +0.6
Or see this region's nucleotide sequence