Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02380

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02379 and H281DRAFT_02380 are separated by 516 nucleotidesH281DRAFT_02380 and H281DRAFT_02381 are separated by 387 nucleotides H281DRAFT_02379: H281DRAFT_02379 - amino acid/amide ABC transporter membrane protein 2, HAAT family, at 541,339 to 542,310 _02379 H281DRAFT_02380: H281DRAFT_02380 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 542,827 to 543,993 _02380 H281DRAFT_02381: H281DRAFT_02381 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 544,381 to 545,541 _02381 Position (kb) 542 543 544Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 541.922 kb on - strand, within H281DRAFT_02379at 541.926 kb on + strand, within H281DRAFT_02379at 541.927 kb on - strand, within H281DRAFT_02379at 542.021 kb on + strand, within H281DRAFT_02379at 542.022 kb on - strand, within H281DRAFT_02379at 542.235 kb on + strandat 542.236 kb on - strandat 542.368 kb on + strandat 542.369 kb on - strandat 542.369 kb on - strandat 542.369 kb on - strandat 542.396 kb on + strandat 542.396 kb on + strandat 542.401 kb on + strandat 542.401 kb on + strandat 542.402 kb on - strandat 542.466 kb on - strandat 542.472 kb on + strandat 542.473 kb on - strandat 542.473 kb on - strandat 542.563 kb on - strandat 542.630 kb on - strandat 542.669 kb on - strandat 542.669 kb on - strandat 542.680 kb on - strandat 542.752 kb on - strandat 542.816 kb on - strandat 543.022 kb on + strand, within H281DRAFT_02380at 543.022 kb on + strand, within H281DRAFT_02380at 543.023 kb on - strand, within H281DRAFT_02380at 543.023 kb on - strand, within H281DRAFT_02380at 543.023 kb on - strand, within H281DRAFT_02380at 543.098 kb on + strand, within H281DRAFT_02380at 543.099 kb on - strand, within H281DRAFT_02380at 543.146 kb on + strand, within H281DRAFT_02380at 543.147 kb on - strand, within H281DRAFT_02380at 543.340 kb on + strand, within H281DRAFT_02380at 543.340 kb on + strand, within H281DRAFT_02380at 543.423 kb on + strand, within H281DRAFT_02380at 543.423 kb on + strand, within H281DRAFT_02380at 543.424 kb on - strand, within H281DRAFT_02380at 543.556 kb on + strand, within H281DRAFT_02380at 543.556 kb on + strand, within H281DRAFT_02380at 543.556 kb on + strand, within H281DRAFT_02380at 543.556 kb on + strand, within H281DRAFT_02380at 543.557 kb on - strand, within H281DRAFT_02380at 543.701 kb on - strand, within H281DRAFT_02380at 543.701 kb on - strand, within H281DRAFT_02380at 543.701 kb on - strand, within H281DRAFT_02380at 543.701 kb on - strand, within H281DRAFT_02380at 543.703 kb on - strand, within H281DRAFT_02380at 543.703 kb on - strand, within H281DRAFT_02380at 543.712 kb on + strand, within H281DRAFT_02380at 543.724 kb on + strand, within H281DRAFT_02380at 543.792 kb on + strand, within H281DRAFT_02380at 544.022 kb on - strandat 544.022 kb on - strandat 544.124 kb on + strandat 544.124 kb on + strandat 544.125 kb on + strandat 544.125 kb on - strandat 544.125 kb on - strandat 544.125 kb on - strandat 544.314 kb on + strandat 544.314 kb on + strandat 544.315 kb on - strandat 544.315 kb on - strandat 544.315 kb on - strandat 544.315 kb on - strandat 544.315 kb on - strandat 544.315 kb on - strandat 544.351 kb on + strandat 544.352 kb on - strandat 544.403 kb on + strandat 544.404 kb on - strandat 544.472 kb on + strandat 544.478 kb on + strandat 544.479 kb on - strandat 544.570 kb on + strand, within H281DRAFT_02381at 544.570 kb on + strand, within H281DRAFT_02381at 544.570 kb on + strand, within H281DRAFT_02381at 544.570 kb on + strand, within H281DRAFT_02381at 544.570 kb on + strand, within H281DRAFT_02381at 544.571 kb on - strand, within H281DRAFT_02381at 544.571 kb on - strand, within H281DRAFT_02381at 544.571 kb on - strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.835 kb on - strand, within H281DRAFT_02381at 544.889 kb on - strand, within H281DRAFT_02381

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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541,922 - H281DRAFT_02379 0.60 -0.2
541,926 + H281DRAFT_02379 0.60 +0.2
541,927 - H281DRAFT_02379 0.60 -1.2
542,021 + H281DRAFT_02379 0.70 -0.1
542,022 - H281DRAFT_02379 0.70 -0.1
542,235 + +0.9
542,236 - -0.7
542,368 + +0.7
542,369 - +0.6
542,369 - -0.0
542,369 - -0.9
542,396 + +0.4
542,396 + -0.3
542,401 + -1.2
542,401 + +0.5
542,402 - +0.2
542,466 - -1.5
542,472 + +0.3
542,473 - -1.3
542,473 - -1.4
542,563 - -3.9
542,630 - +1.3
542,669 - +0.4
542,669 - -2.3
542,680 - -2.4
542,752 - -0.3
542,816 - +0.1
543,022 + H281DRAFT_02380 0.17 +0.0
543,022 + H281DRAFT_02380 0.17 -0.9
543,023 - H281DRAFT_02380 0.17 +0.8
543,023 - H281DRAFT_02380 0.17 -0.6
543,023 - H281DRAFT_02380 0.17 +0.1
543,098 + H281DRAFT_02380 0.23 +2.7
543,099 - H281DRAFT_02380 0.23 -0.2
543,146 + H281DRAFT_02380 0.27 +0.2
543,147 - H281DRAFT_02380 0.27 +0.4
543,340 + H281DRAFT_02380 0.44 +1.2
543,340 + H281DRAFT_02380 0.44 +0.9
543,423 + H281DRAFT_02380 0.51 +3.1
543,423 + H281DRAFT_02380 0.51 +0.2
543,424 - H281DRAFT_02380 0.51 -0.2
543,556 + H281DRAFT_02380 0.62 -1.2
543,556 + H281DRAFT_02380 0.62 +0.1
543,556 + H281DRAFT_02380 0.62 -0.5
543,556 + H281DRAFT_02380 0.62 +0.6
543,557 - H281DRAFT_02380 0.63 +1.0
543,701 - H281DRAFT_02380 0.75 -0.6
543,701 - H281DRAFT_02380 0.75 -2.3
543,701 - H281DRAFT_02380 0.75 -0.1
543,701 - H281DRAFT_02380 0.75 +0.6
543,703 - H281DRAFT_02380 0.75 +0.8
543,703 - H281DRAFT_02380 0.75 +0.6
543,712 + H281DRAFT_02380 0.76 -2.5
543,724 + H281DRAFT_02380 0.77 +1.0
543,792 + H281DRAFT_02380 0.83 -3.2
544,022 - +1.0
544,022 - +0.6
544,124 + -0.4
544,124 + +1.1
544,125 + +1.1
544,125 - +0.9
544,125 - -1.8
544,125 - +0.3
544,314 + -0.6
544,314 + +0.8
544,315 - +0.8
544,315 - -1.9
544,315 - -0.6
544,315 - -0.1
544,315 - -0.0
544,315 - -0.0
544,351 + +0.4
544,352 - +1.2
544,403 + +0.4
544,404 - -0.0
544,472 + +0.7
544,478 + -0.1
544,479 - +0.5
544,570 + H281DRAFT_02381 0.16 -1.3
544,570 + H281DRAFT_02381 0.16 +0.2
544,570 + H281DRAFT_02381 0.16 +0.5
544,570 + H281DRAFT_02381 0.16 +1.0
544,570 + H281DRAFT_02381 0.16 +0.4
544,571 - H281DRAFT_02381 0.16 -3.4
544,571 - H281DRAFT_02381 0.16 +0.0
544,571 - H281DRAFT_02381 0.16 +0.3
544,834 + H281DRAFT_02381 0.39 +0.7
544,834 + H281DRAFT_02381 0.39 -0.6
544,834 + H281DRAFT_02381 0.39 -0.0
544,834 + H281DRAFT_02381 0.39 +0.4
544,834 + H281DRAFT_02381 0.39 +0.2
544,834 + H281DRAFT_02381 0.39 -2.4
544,835 - H281DRAFT_02381 0.39 +0.1
544,889 - H281DRAFT_02381 0.44 +2.6

Or see this region's nucleotide sequence