Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02169 and H281DRAFT_02170 are separated by 109 nucleotides H281DRAFT_02170 and H281DRAFT_02171 are separated by 86 nucleotides H281DRAFT_02171 and H281DRAFT_02172 are separated by 342 nucleotides
H281DRAFT_02169: H281DRAFT_02169 - hypothetical protein, at 309,317 to 309,874
_02169
H281DRAFT_02170: H281DRAFT_02170 - Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family, at 309,984 to 310,781
_02170
H281DRAFT_02171: H281DRAFT_02171 - aldose 1-epimerase, at 310,868 to 311,851
_02171
H281DRAFT_02172: H281DRAFT_02172 - transcriptional regulator, LacI family, at 312,194 to 313,246
_02172
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 309.944 kb on + strand at 309.945 kb on - strand at 309.945 kb on - strand at 310.134 kb on + strand, within H281DRAFT_02170 at 310.553 kb on + strand, within H281DRAFT_02170 at 310.554 kb on - strand, within H281DRAFT_02170 at 310.755 kb on + strand at 310.755 kb on + strand at 310.755 kb on + strand at 310.755 kb on + strand at 310.755 kb on + strand at 310.755 kb on + strand at 310.756 kb on - strand at 310.756 kb on - strand at 310.869 kb on + strand at 310.870 kb on - strand at 310.870 kb on - strand at 310.870 kb on - strand at 310.870 kb on - strand at 310.870 kb on - strand at 311.000 kb on + strand, within H281DRAFT_02171 at 311.000 kb on + strand, within H281DRAFT_02171 at 311.001 kb on - strand, within H281DRAFT_02171 at 311.001 kb on - strand, within H281DRAFT_02171 at 311.001 kb on - strand, within H281DRAFT_02171 at 311.001 kb on - strand, within H281DRAFT_02171 at 311.035 kb on + strand, within H281DRAFT_02171 at 311.035 kb on + strand, within H281DRAFT_02171 at 311.035 kb on + strand, within H281DRAFT_02171 at 311.036 kb on - strand, within H281DRAFT_02171 at 311.036 kb on - strand, within H281DRAFT_02171 at 311.036 kb on - strand, within H281DRAFT_02171 at 311.036 kb on - strand, within H281DRAFT_02171 at 311.250 kb on + strand, within H281DRAFT_02171 at 311.251 kb on - strand, within H281DRAFT_02171 at 311.280 kb on + strand, within H281DRAFT_02171 at 311.280 kb on + strand, within H281DRAFT_02171 at 311.281 kb on - strand, within H281DRAFT_02171 at 311.411 kb on - strand, within H281DRAFT_02171 at 311.547 kb on - strand, within H281DRAFT_02171 at 311.547 kb on - strand, within H281DRAFT_02171 at 311.592 kb on + strand, within H281DRAFT_02171 at 311.697 kb on + strand, within H281DRAFT_02171 at 311.895 kb on + strand at 311.923 kb on + strand at 311.924 kb on - strand at 311.924 kb on - strand at 312.093 kb on - strand at 312.093 kb on - strand at 312.093 kb on - strand at 312.572 kb on + strand, within H281DRAFT_02172 at 312.573 kb on - strand, within H281DRAFT_02172 at 312.573 kb on - strand, within H281DRAFT_02172 at 312.635 kb on + strand, within H281DRAFT_02172 at 312.636 kb on - strand, within H281DRAFT_02172 at 312.704 kb on + strand, within H281DRAFT_02172 at 312.705 kb on - strand, within H281DRAFT_02172 at 312.737 kb on + strand, within H281DRAFT_02172 at 312.737 kb on + strand, within H281DRAFT_02172 at 312.737 kb on + strand, within H281DRAFT_02172 at 312.739 kb on + strand, within H281DRAFT_02172 at 312.739 kb on + strand, within H281DRAFT_02172
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 309,944 + -0.4 309,945 - -0.7 309,945 - +0.5 310,134 + H281DRAFT_02170 0.19 +1.0 310,553 + H281DRAFT_02170 0.71 +1.5 310,554 - H281DRAFT_02170 0.71 +0.2 310,755 + +0.2 310,755 + +0.7 310,755 + +0.0 310,755 + +0.5 310,755 + +0.3 310,755 + +0.9 310,756 - +1.0 310,756 - -0.3 310,869 + +0.3 310,870 - -0.1 310,870 - -0.0 310,870 - -0.2 310,870 - +0.0 310,870 - -2.5 311,000 + H281DRAFT_02171 0.13 -3.4 311,000 + H281DRAFT_02171 0.13 +0.2 311,001 - H281DRAFT_02171 0.14 -1.6 311,001 - H281DRAFT_02171 0.14 -1.8 311,001 - H281DRAFT_02171 0.14 +1.2 311,001 - H281DRAFT_02171 0.14 -0.9 311,035 + H281DRAFT_02171 0.17 -0.7 311,035 + H281DRAFT_02171 0.17 -0.2 311,035 + H281DRAFT_02171 0.17 +0.4 311,036 - H281DRAFT_02171 0.17 +0.3 311,036 - H281DRAFT_02171 0.17 +0.7 311,036 - H281DRAFT_02171 0.17 +0.1 311,036 - H281DRAFT_02171 0.17 +0.2 311,250 + H281DRAFT_02171 0.39 -0.1 311,251 - H281DRAFT_02171 0.39 -0.5 311,280 + H281DRAFT_02171 0.42 +0.1 311,280 + H281DRAFT_02171 0.42 +0.9 311,281 - H281DRAFT_02171 0.42 +1.2 311,411 - H281DRAFT_02171 0.55 -0.5 311,547 - H281DRAFT_02171 0.69 +1.3 311,547 - H281DRAFT_02171 0.69 -0.1 311,592 + H281DRAFT_02171 0.74 -0.8 311,697 + H281DRAFT_02171 0.84 +0.6 311,895 + -0.7 311,923 + +1.4 311,924 - -2.4 311,924 - -1.4 312,093 - +0.3 312,093 - +0.6 312,093 - +1.8 312,572 + H281DRAFT_02172 0.36 +0.1 312,573 - H281DRAFT_02172 0.36 +0.0 312,573 - H281DRAFT_02172 0.36 -0.2 312,635 + H281DRAFT_02172 0.42 +0.1 312,636 - H281DRAFT_02172 0.42 +1.9 312,704 + H281DRAFT_02172 0.48 +0.9 312,705 - H281DRAFT_02172 0.49 +1.3 312,737 + H281DRAFT_02172 0.52 +0.6 312,737 + H281DRAFT_02172 0.52 +1.4 312,737 + H281DRAFT_02172 0.52 +1.3 312,739 + H281DRAFT_02172 0.52 +1.2 312,739 + H281DRAFT_02172 0.52 +0.8
Or see this region's nucleotide sequence