Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02167 and H281DRAFT_02168 are separated by 242 nucleotides H281DRAFT_02168 and H281DRAFT_02169 are separated by 303 nucleotides H281DRAFT_02169 and H281DRAFT_02170 are separated by 109 nucleotides
H281DRAFT_02167: H281DRAFT_02167 - L-2-hydroxyglutarate oxidase LhgO, at 306,699 to 307,805
_02167
H281DRAFT_02168: H281DRAFT_02168 - ATP-dependent Lon protease, at 308,048 to 309,013
_02168
H281DRAFT_02169: H281DRAFT_02169 - hypothetical protein, at 309,317 to 309,874
_02169
H281DRAFT_02170: H281DRAFT_02170 - Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family, at 309,984 to 310,781
_02170
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 307.111 kb on + strand, within H281DRAFT_02167 at 307.112 kb on - strand, within H281DRAFT_02167 at 307.112 kb on - strand, within H281DRAFT_02167 at 307.112 kb on - strand, within H281DRAFT_02167 at 307.112 kb on - strand, within H281DRAFT_02167 at 307.112 kb on - strand, within H281DRAFT_02167 at 307.129 kb on + strand, within H281DRAFT_02167 at 307.271 kb on + strand, within H281DRAFT_02167 at 307.271 kb on + strand, within H281DRAFT_02167 at 307.448 kb on + strand, within H281DRAFT_02167 at 307.448 kb on + strand, within H281DRAFT_02167 at 307.448 kb on + strand, within H281DRAFT_02167 at 307.448 kb on + strand, within H281DRAFT_02167 at 307.449 kb on - strand, within H281DRAFT_02167 at 307.565 kb on + strand at 307.565 kb on + strand, within H281DRAFT_02167 at 307.580 kb on - strand, within H281DRAFT_02167 at 307.585 kb on + strand, within H281DRAFT_02167 at 307.586 kb on - strand at 307.611 kb on + strand, within H281DRAFT_02167 at 307.612 kb on - strand, within H281DRAFT_02167 at 307.640 kb on - strand, within H281DRAFT_02167 at 307.642 kb on + strand, within H281DRAFT_02167 at 307.642 kb on + strand, within H281DRAFT_02167 at 307.642 kb on + strand at 307.642 kb on + strand, within H281DRAFT_02167 at 307.642 kb on + strand, within H281DRAFT_02167 at 307.642 kb on + strand, within H281DRAFT_02167 at 307.643 kb on - strand, within H281DRAFT_02167 at 307.643 kb on - strand, within H281DRAFT_02167 at 307.643 kb on - strand, within H281DRAFT_02167 at 307.643 kb on - strand, within H281DRAFT_02167 at 307.643 kb on - strand, within H281DRAFT_02167 at 307.782 kb on + strand at 307.852 kb on + strand at 307.852 kb on + strand at 307.852 kb on + strand at 307.852 kb on + strand at 307.854 kb on + strand at 307.854 kb on + strand at 307.854 kb on + strand at 307.854 kb on + strand at 307.854 kb on + strand at 307.854 kb on + strand at 307.854 kb on + strand at 307.854 kb on + strand at 307.854 kb on + strand at 307.855 kb on - strand at 307.855 kb on - strand at 307.855 kb on - strand at 307.855 kb on - strand at 307.855 kb on - strand at 307.855 kb on - strand at 307.887 kb on + strand at 307.887 kb on + strand at 307.887 kb on + strand at 307.888 kb on - strand at 307.942 kb on - strand at 308.014 kb on - strand at 308.050 kb on - strand at 308.262 kb on + strand, within H281DRAFT_02168 at 308.262 kb on + strand, within H281DRAFT_02168 at 308.460 kb on + strand, within H281DRAFT_02168 at 308.461 kb on - strand, within H281DRAFT_02168 at 308.481 kb on + strand, within H281DRAFT_02168 at 308.524 kb on + strand, within H281DRAFT_02168 at 308.524 kb on + strand, within H281DRAFT_02168 at 308.538 kb on + strand, within H281DRAFT_02168 at 308.538 kb on + strand, within H281DRAFT_02168 at 308.539 kb on - strand, within H281DRAFT_02168 at 308.539 kb on - strand, within H281DRAFT_02168 at 308.646 kb on + strand, within H281DRAFT_02168 at 308.653 kb on - strand, within H281DRAFT_02168 at 308.905 kb on + strand, within H281DRAFT_02168 at 308.905 kb on + strand, within H281DRAFT_02168 at 308.905 kb on + strand, within H281DRAFT_02168 at 308.905 kb on + strand, within H281DRAFT_02168 at 308.905 kb on + strand, within H281DRAFT_02168 at 308.906 kb on - strand, within H281DRAFT_02168 at 308.906 kb on - strand, within H281DRAFT_02168 at 308.906 kb on - strand, within H281DRAFT_02168 at 308.970 kb on + strand at 308.970 kb on + strand at 308.970 kb on + strand at 308.971 kb on - strand at 308.971 kb on - strand at 308.971 kb on - strand at 309.141 kb on + strand at 309.142 kb on - strand at 309.232 kb on - strand at 309.265 kb on + strand at 309.265 kb on + strand at 309.265 kb on + strand at 309.266 kb on - strand at 309.266 kb on - strand at 309.316 kb on + strand at 309.417 kb on + strand, within H281DRAFT_02169 at 309.508 kb on + strand, within H281DRAFT_02169 at 309.509 kb on - strand, within H281DRAFT_02169 at 309.865 kb on + strand at 309.866 kb on - strand at 309.944 kb on + strand at 309.945 kb on - strand at 309.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 307,111 + H281DRAFT_02167 0.37 +0.2 307,112 - H281DRAFT_02167 0.37 -0.6 307,112 - H281DRAFT_02167 0.37 +0.4 307,112 - H281DRAFT_02167 0.37 -0.1 307,112 - H281DRAFT_02167 0.37 -0.9 307,112 - H281DRAFT_02167 0.37 -0.4 307,129 + H281DRAFT_02167 0.39 -1.2 307,271 + H281DRAFT_02167 0.52 -0.4 307,271 + H281DRAFT_02167 0.52 +0.1 307,448 + H281DRAFT_02167 0.68 +0.9 307,448 + H281DRAFT_02167 0.68 +1.1 307,448 + H281DRAFT_02167 0.68 +3.0 307,448 + H281DRAFT_02167 0.68 +0.7 307,449 - H281DRAFT_02167 0.68 -0.5 307,565 + +0.7 307,565 + H281DRAFT_02167 0.78 +0.0 307,580 - H281DRAFT_02167 0.80 -0.0 307,585 + H281DRAFT_02167 0.80 -0.7 307,586 - -1.6 307,611 + H281DRAFT_02167 0.82 -0.0 307,612 - H281DRAFT_02167 0.82 +0.2 307,640 - H281DRAFT_02167 0.85 -2.0 307,642 + H281DRAFT_02167 0.85 +0.2 307,642 + H281DRAFT_02167 0.85 -0.1 307,642 + -0.0 307,642 + H281DRAFT_02167 0.85 +1.1 307,642 + H281DRAFT_02167 0.85 -0.3 307,642 + H281DRAFT_02167 0.85 +0.0 307,643 - H281DRAFT_02167 0.85 -0.5 307,643 - H281DRAFT_02167 0.85 -0.5 307,643 - H281DRAFT_02167 0.85 -0.3 307,643 - H281DRAFT_02167 0.85 -0.9 307,643 - H281DRAFT_02167 0.85 -0.2 307,782 + -0.2 307,852 + +1.3 307,852 + +5.0 307,852 + -0.4 307,852 + +0.3 307,854 + -0.0 307,854 + +0.1 307,854 + +0.1 307,854 + +0.0 307,854 + +0.5 307,854 + +0.9 307,854 + +0.6 307,854 + -1.4 307,854 + -0.8 307,855 - -0.2 307,855 - +0.9 307,855 - -0.2 307,855 - -0.6 307,855 - -0.6 307,855 - -0.7 307,887 + -0.5 307,887 + -2.0 307,887 + +1.5 307,888 - +0.8 307,942 - +0.2 308,014 - +0.4 308,050 - -0.9 308,262 + H281DRAFT_02168 0.22 +0.6 308,262 + H281DRAFT_02168 0.22 -0.1 308,460 + H281DRAFT_02168 0.43 -1.9 308,461 - H281DRAFT_02168 0.43 +0.1 308,481 + H281DRAFT_02168 0.45 +0.7 308,524 + H281DRAFT_02168 0.49 +0.3 308,524 + H281DRAFT_02168 0.49 +0.0 308,538 + H281DRAFT_02168 0.51 -0.4 308,538 + H281DRAFT_02168 0.51 +0.6 308,539 - H281DRAFT_02168 0.51 +0.6 308,539 - H281DRAFT_02168 0.51 +0.3 308,646 + H281DRAFT_02168 0.62 +0.0 308,653 - H281DRAFT_02168 0.63 -0.0 308,905 + H281DRAFT_02168 0.89 +0.2 308,905 + H281DRAFT_02168 0.89 +0.1 308,905 + H281DRAFT_02168 0.89 +0.8 308,905 + H281DRAFT_02168 0.89 -0.8 308,905 + H281DRAFT_02168 0.89 -2.3 308,906 - H281DRAFT_02168 0.89 -0.8 308,906 - H281DRAFT_02168 0.89 -1.6 308,906 - H281DRAFT_02168 0.89 -0.7 308,970 + +0.5 308,970 + +0.5 308,970 + -0.2 308,971 - +0.3 308,971 - -1.1 308,971 - +0.2 309,141 + +1.7 309,142 - +0.2 309,232 - +0.0 309,265 + -1.5 309,265 + +0.8 309,265 + -1.3 309,266 - +0.3 309,266 - +0.0 309,316 + +1.2 309,417 + H281DRAFT_02169 0.18 +0.2 309,508 + H281DRAFT_02169 0.34 +0.1 309,509 - H281DRAFT_02169 0.34 +0.1 309,865 + +0.0 309,866 - -1.4 309,944 + -0.4 309,945 - -0.7 309,945 - +0.5
Or see this region's nucleotide sequence