Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01923 and H281DRAFT_01924 overlap by 4 nucleotides H281DRAFT_01924 and H281DRAFT_01925 are separated by 30 nucleotides H281DRAFT_01925 and H281DRAFT_01926 overlap by 4 nucleotides H281DRAFT_01926 and H281DRAFT_01927 are separated by 178 nucleotides
H281DRAFT_01923: H281DRAFT_01923 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase), at 41,314 to 41,874
_01923
H281DRAFT_01924: H281DRAFT_01924 - lipopolysaccharide export system protein LptC, at 41,871 to 42,470
_01924
H281DRAFT_01925: H281DRAFT_01925 - lipopolysaccharide export system protein LptA, at 42,501 to 43,172
_01925
H281DRAFT_01926: H281DRAFT_01926 - lipopolysaccharide export system ATP-binding protein, at 43,169 to 43,954
_01926
H281DRAFT_01927: H281DRAFT_01927 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 44,133 to 45,647
_01927
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 41.566 kb on + strand, within H281DRAFT_01923 at 41.566 kb on + strand, within H281DRAFT_01923 at 41.566 kb on + strand, within H281DRAFT_01923 at 42.477 kb on + strand at 43.952 kb on + strand at 43.952 kb on + strand at 43.952 kb on + strand at 43.952 kb on + strand at 43.952 kb on + strand at 43.952 kb on + strand at 43.952 kb on + strand at 43.952 kb on + strand at 43.953 kb on - strand at 43.953 kb on - strand at 43.953 kb on - strand at 43.953 kb on - strand at 44.089 kb on + strand at 44.089 kb on + strand at 44.089 kb on + strand at 44.112 kb on + strand at 44.112 kb on + strand at 44.113 kb on - strand at 44.113 kb on - strand at 44.158 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 41,566 + H281DRAFT_01923 0.45 -0.8 41,566 + H281DRAFT_01923 0.45 +0.2 41,566 + H281DRAFT_01923 0.45 -1.6 42,477 + -0.5 43,952 + -1.1 43,952 + +0.9 43,952 + -0.8 43,952 + +0.6 43,952 + -0.9 43,952 + +0.4 43,952 + -0.2 43,952 + +0.1 43,953 - +0.1 43,953 - -0.1 43,953 - -0.2 43,953 - -0.8 44,089 + +0.5 44,089 + -1.5 44,089 + -1.6 44,112 + -0.4 44,112 + -2.2 44,113 - -0.2 44,113 - -0.4 44,158 + +3.0
Or see this region's nucleotide sequence