Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01829 and H281DRAFT_01830 are separated by 95 nucleotides H281DRAFT_01830 and H281DRAFT_01831 overlap by 9 nucleotides
H281DRAFT_01829: H281DRAFT_01829 - 4-hydroxy-tetrahydrodipicolinate synthase, at 735,080 to 736,039
_01829
H281DRAFT_01830: H281DRAFT_01830 - transcriptional regulator, LacI family, at 736,135 to 737,229
_01830
H281DRAFT_01831: H281DRAFT_01831 - DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain, at 737,221 to 738,465
_01831
Position (kb) 736
737
738 Strain fitness (log2 ratio) -1
0
1
2 at 735.168 kb on - strand at 735.414 kb on + strand, within H281DRAFT_01829 at 735.571 kb on - strand, within H281DRAFT_01829 at 735.765 kb on - strand, within H281DRAFT_01829 at 735.881 kb on + strand, within H281DRAFT_01829 at 736.654 kb on + strand, within H281DRAFT_01830 at 736.711 kb on + strand, within H281DRAFT_01830 at 736.950 kb on + strand, within H281DRAFT_01830 at 737.027 kb on + strand, within H281DRAFT_01830 at 737.028 kb on - strand, within H281DRAFT_01830 at 737.034 kb on - strand, within H281DRAFT_01830 at 737.057 kb on + strand, within H281DRAFT_01830 at 737.057 kb on + strand, within H281DRAFT_01830 at 737.132 kb on - strand at 737.228 kb on - strand at 737.686 kb on + strand, within H281DRAFT_01831 at 737.836 kb on - strand, within H281DRAFT_01831 at 737.930 kb on + strand, within H281DRAFT_01831 at 738.203 kb on - strand, within H281DRAFT_01831
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 735,168 - +0.1 735,414 + H281DRAFT_01829 0.35 +0.6 735,571 - H281DRAFT_01829 0.51 -0.9 735,765 - H281DRAFT_01829 0.71 -0.2 735,881 + H281DRAFT_01829 0.83 +0.1 736,654 + H281DRAFT_01830 0.47 +1.0 736,711 + H281DRAFT_01830 0.53 +2.1 736,950 + H281DRAFT_01830 0.74 +1.9 737,027 + H281DRAFT_01830 0.81 +1.6 737,028 - H281DRAFT_01830 0.82 +0.9 737,034 - H281DRAFT_01830 0.82 +1.3 737,057 + H281DRAFT_01830 0.84 +1.9 737,057 + H281DRAFT_01830 0.84 +2.4 737,132 - +1.6 737,228 - -0.5 737,686 + H281DRAFT_01831 0.37 -1.3 737,836 - H281DRAFT_01831 0.49 +0.4 737,930 + H281DRAFT_01831 0.57 -0.2 738,203 - H281DRAFT_01831 0.79 +0.4
Or see this region's nucleotide sequence