Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01767

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01766 and H281DRAFT_01767 are separated by 292 nucleotidesH281DRAFT_01767 and H281DRAFT_01768 are separated by 40 nucleotides H281DRAFT_01766: H281DRAFT_01766 - cytochrome c oxidase subunit 2, at 661,767 to 662,825 _01766 H281DRAFT_01767: H281DRAFT_01767 - hypothetical protein, at 663,118 to 663,264 _01767 H281DRAFT_01768: H281DRAFT_01768 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 663,305 to 664,549 _01768 Position (kb) 663 664Strain fitness (log2 ratio) -1 0 1at 662.130 kb on - strandat 662.197 kb on - strand, within H281DRAFT_01766at 662.467 kb on + strand, within H281DRAFT_01766at 662.868 kb on + strandat 662.870 kb on + strandat 662.876 kb on + strandat 662.876 kb on + strandat 662.877 kb on - strandat 663.220 kb on - strand, within H281DRAFT_01767at 663.333 kb on + strandat 663.732 kb on + strand, within H281DRAFT_01768at 663.733 kb on - strand, within H281DRAFT_01768at 663.954 kb on + strand, within H281DRAFT_01768at 663.954 kb on + strand, within H281DRAFT_01768at 663.954 kb on + strand, within H281DRAFT_01768at 663.954 kb on + strand, within H281DRAFT_01768at 663.955 kb on - strand, within H281DRAFT_01768at 664.016 kb on - strand, within H281DRAFT_01768

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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662,130 - +1.3
662,197 - H281DRAFT_01766 0.41 +0.1
662,467 + H281DRAFT_01766 0.66 -1.4
662,868 + +0.7
662,870 + +0.3
662,876 + +0.5
662,876 + -0.0
662,877 - -0.1
663,220 - H281DRAFT_01767 0.69 +0.9
663,333 + -0.1
663,732 + H281DRAFT_01768 0.34 +0.3
663,733 - H281DRAFT_01768 0.34 -0.8
663,954 + H281DRAFT_01768 0.52 -1.3
663,954 + H281DRAFT_01768 0.52 +1.0
663,954 + H281DRAFT_01768 0.52 +0.8
663,954 + H281DRAFT_01768 0.52 +0.2
663,955 - H281DRAFT_01768 0.52 +0.5
664,016 - H281DRAFT_01768 0.57 +0.9

Or see this region's nucleotide sequence