Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01057

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01055 and H281DRAFT_01056 overlap by 4 nucleotidesH281DRAFT_01056 and H281DRAFT_01057 overlap by 17 nucleotidesH281DRAFT_01057 and H281DRAFT_01058 overlap by 4 nucleotides H281DRAFT_01055: H281DRAFT_01055 - monosaccharide ABC transporter membrane protein, CUT2 family, at 1,184,855 to 1,185,823 _01055 H281DRAFT_01056: H281DRAFT_01056 - monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-), at 1,185,820 to 1,186,803 _01056 H281DRAFT_01057: H281DRAFT_01057 - monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-), at 1,186,787 to 1,188,340 _01057 H281DRAFT_01058: H281DRAFT_01058 - monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-), at 1,188,337 to 1,189,491 _01058 Position (kb) 1186 1187 1188 1189Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1186.092 kb on + strand, within H281DRAFT_01056at 1186.199 kb on - strand, within H281DRAFT_01056at 1186.200 kb on - strand, within H281DRAFT_01056at 1186.205 kb on + strandat 1186.206 kb on - strand, within H281DRAFT_01056at 1186.301 kb on + strand, within H281DRAFT_01056at 1186.355 kb on + strand, within H281DRAFT_01056at 1187.167 kb on - strand, within H281DRAFT_01057at 1187.580 kb on + strand, within H281DRAFT_01057at 1187.580 kb on + strand, within H281DRAFT_01057at 1187.730 kb on + strand, within H281DRAFT_01057at 1188.157 kb on - strand, within H281DRAFT_01057at 1188.410 kb on - strandat 1188.526 kb on - strand, within H281DRAFT_01058at 1188.763 kb on - strand, within H281DRAFT_01058at 1188.771 kb on - strand, within H281DRAFT_01058

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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1,186,092 + H281DRAFT_01056 0.28 -1.0
1,186,199 - H281DRAFT_01056 0.39 -1.0
1,186,200 - H281DRAFT_01056 0.39 +0.3
1,186,205 + -1.6
1,186,206 - H281DRAFT_01056 0.39 +0.8
1,186,301 + H281DRAFT_01056 0.49 -0.1
1,186,355 + H281DRAFT_01056 0.54 -1.5
1,187,167 - H281DRAFT_01057 0.24 -0.4
1,187,580 + H281DRAFT_01057 0.51 -0.2
1,187,580 + H281DRAFT_01057 0.51 +0.5
1,187,730 + H281DRAFT_01057 0.61 +1.1
1,188,157 - H281DRAFT_01057 0.88 +0.1
1,188,410 - -0.5
1,188,526 - H281DRAFT_01058 0.16 -4.0
1,188,763 - H281DRAFT_01058 0.37 +1.4
1,188,771 - H281DRAFT_01058 0.38 +0.2

Or see this region's nucleotide sequence