Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01039

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01038 and H281DRAFT_01039 overlap by 4 nucleotidesH281DRAFT_01039 and H281DRAFT_01040 are separated by 2 nucleotides H281DRAFT_01038: H281DRAFT_01038 - methylmalonyl-CoA mutase, at 1,167,404 to 1,169,515 _01038 H281DRAFT_01039: H281DRAFT_01039 - probable biosynthetic protein, Pnap_2097 family, at 1,169,512 to 1,170,327 _01039 H281DRAFT_01040: H281DRAFT_01040 - putative flavoprotein involved in K+ transport, at 1,170,330 to 1,171,622 _01040 Position (kb) 1169 1170 1171Strain fitness (log2 ratio) -3 -2 -1 0 1at 1168.729 kb on - strand, within H281DRAFT_01038at 1168.815 kb on + strand, within H281DRAFT_01038at 1169.000 kb on - strand, within H281DRAFT_01038at 1169.432 kb on - strandat 1169.628 kb on + strand, within H281DRAFT_01039at 1170.434 kb on + strandat 1170.435 kb on - strandat 1170.712 kb on + strand, within H281DRAFT_01040at 1170.713 kb on - strand, within H281DRAFT_01040at 1170.866 kb on - strand, within H281DRAFT_01040

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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1,168,729 - H281DRAFT_01038 0.63 +0.2
1,168,815 + H281DRAFT_01038 0.67 +0.9
1,169,000 - H281DRAFT_01038 0.76 -1.2
1,169,432 - -0.8
1,169,628 + H281DRAFT_01039 0.14 -0.4
1,170,434 + -3.6
1,170,435 - -0.2
1,170,712 + H281DRAFT_01040 0.30 -0.1
1,170,713 - H281DRAFT_01040 0.30 +0.3
1,170,866 - H281DRAFT_01040 0.41 +0.6

Or see this region's nucleotide sequence