Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00920

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00918 and H281DRAFT_00919 are separated by 139 nucleotidesH281DRAFT_00919 and H281DRAFT_00920 are separated by 214 nucleotidesH281DRAFT_00920 and H281DRAFT_00921 are separated by 228 nucleotidesH281DRAFT_00921 and H281DRAFT_00922 are separated by 138 nucleotides H281DRAFT_00918: H281DRAFT_00918 - Conserved secreted protein, at 1,022,231 to 1,022,746 _00918 H281DRAFT_00919: H281DRAFT_00919 - hypothetical protein, at 1,022,886 to 1,023,242 _00919 H281DRAFT_00920: H281DRAFT_00920 - transcriptional regulator, GntR family, at 1,023,457 to 1,024,980 _00920 H281DRAFT_00921: H281DRAFT_00921 - uncharacterized domain 1-containing protein, at 1,025,209 to 1,025,694 _00921 H281DRAFT_00922: H281DRAFT_00922 - hypothetical protein, at 1,025,833 to 1,026,831 _00922 Position (kb) 1023 1024 1025Strain fitness (log2 ratio) -2 -1 0 1 2at 1022.674 kb on + strandat 1022.675 kb on - strand, within H281DRAFT_00918at 1022.784 kb on + strandat 1022.785 kb on - strandat 1022.858 kb on + strandat 1022.859 kb on - strandat 1022.865 kb on - strandat 1022.887 kb on + strandat 1022.888 kb on - strandat 1022.888 kb on - strandat 1023.021 kb on - strand, within H281DRAFT_00919at 1023.280 kb on + strandat 1023.313 kb on + strandat 1023.357 kb on + strandat 1023.383 kb on - strandat 1023.437 kb on - strandat 1023.437 kb on - strandat 1023.560 kb on - strandat 1023.841 kb on + strand, within H281DRAFT_00920at 1023.841 kb on + strand, within H281DRAFT_00920at 1023.841 kb on + strand, within H281DRAFT_00920at 1023.842 kb on - strand, within H281DRAFT_00920at 1024.627 kb on + strand, within H281DRAFT_00920at 1024.743 kb on + strand, within H281DRAFT_00920at 1025.095 kb on - strandat 1025.101 kb on + strandat 1025.343 kb on + strand, within H281DRAFT_00921at 1025.343 kb on + strand, within H281DRAFT_00921at 1025.344 kb on - strand, within H281DRAFT_00921at 1025.344 kb on - strand, within H281DRAFT_00921at 1025.375 kb on + strand, within H281DRAFT_00921at 1025.605 kb on + strand, within H281DRAFT_00921at 1025.682 kb on + strandat 1025.759 kb on + strandat 1025.819 kb on - strandat 1025.956 kb on - strand, within H281DRAFT_00922at 1025.962 kb on + strand, within H281DRAFT_00922at 1025.963 kb on - strand, within H281DRAFT_00922at 1025.963 kb on - strand, within H281DRAFT_00922at 1025.980 kb on + strand, within H281DRAFT_00922

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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1,022,674 + +0.9
1,022,675 - H281DRAFT_00918 0.86 +0.4
1,022,784 + -1.9
1,022,785 - +0.5
1,022,858 + -0.6
1,022,859 - -0.6
1,022,865 - -0.1
1,022,887 + +0.8
1,022,888 - -2.1
1,022,888 - +0.6
1,023,021 - H281DRAFT_00919 0.38 +0.4
1,023,280 + +0.2
1,023,313 + -0.1
1,023,357 + -0.2
1,023,383 - +0.2
1,023,437 - -0.1
1,023,437 - -0.3
1,023,560 - +0.8
1,023,841 + H281DRAFT_00920 0.25 -1.7
1,023,841 + H281DRAFT_00920 0.25 +0.3
1,023,841 + H281DRAFT_00920 0.25 +1.5
1,023,842 - H281DRAFT_00920 0.25 +2.6
1,024,627 + H281DRAFT_00920 0.77 +2.3
1,024,743 + H281DRAFT_00920 0.84 +0.1
1,025,095 - +1.3
1,025,101 + +0.0
1,025,343 + H281DRAFT_00921 0.28 -2.4
1,025,343 + H281DRAFT_00921 0.28 -0.8
1,025,344 - H281DRAFT_00921 0.28 +0.5
1,025,344 - H281DRAFT_00921 0.28 -0.4
1,025,375 + H281DRAFT_00921 0.34 -1.5
1,025,605 + H281DRAFT_00921 0.81 +1.0
1,025,682 + -2.2
1,025,759 + +0.4
1,025,819 - -0.9
1,025,956 - H281DRAFT_00922 0.12 +0.1
1,025,962 + H281DRAFT_00922 0.13 +0.7
1,025,963 - H281DRAFT_00922 0.13 -1.0
1,025,963 - H281DRAFT_00922 0.13 -1.3
1,025,980 + H281DRAFT_00922 0.15 -1.7

Or see this region's nucleotide sequence