Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00570 and H281DRAFT_00571 are separated by 60 nucleotides H281DRAFT_00571 and H281DRAFT_00572 are separated by 80 nucleotides H281DRAFT_00572 and H281DRAFT_00573 are separated by 141 nucleotides H281DRAFT_00573 and H281DRAFT_00574 are separated by 16 nucleotides H281DRAFT_00574 and H281DRAFT_00575 are separated by 140 nucleotides H281DRAFT_00575 and H281DRAFT_00576 are separated by 147 nucleotides
H281DRAFT_00570: H281DRAFT_00570 - tRNA_Asp_GTC, at 638,997 to 639,073
_00570
H281DRAFT_00571: H281DRAFT_00571 - tRNA_Glu_TTC, at 639,134 to 639,209
_00571
H281DRAFT_00572: H281DRAFT_00572 - tRNA_Asp_GTC, at 639,290 to 639,366
_00572
H281DRAFT_00573: H281DRAFT_00573 - Predicted acetyltransferase, at 639,508 to 639,972
_00573
H281DRAFT_00574: H281DRAFT_00574 - transcriptional regulator, AraC family, at 639,989 to 640,900
_00574
H281DRAFT_00575: H281DRAFT_00575 - Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family, at 641,041 to 641,442
_00575
H281DRAFT_00576: H281DRAFT_00576 - malate synthase, at 641,590 to 643,191
_00576
Position (kb) 639
640
641 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 639.147 kb on - strand, within H281DRAFT_00571 at 639.298 kb on - strand at 639.311 kb on - strand, within H281DRAFT_00572 at 639.431 kb on - strand at 639.431 kb on - strand at 639.549 kb on + strand at 639.610 kb on + strand, within H281DRAFT_00573 at 639.611 kb on - strand, within H281DRAFT_00573 at 639.611 kb on - strand at 639.611 kb on - strand, within H281DRAFT_00573 at 639.613 kb on + strand, within H281DRAFT_00573 at 639.748 kb on - strand, within H281DRAFT_00573 at 639.799 kb on + strand, within H281DRAFT_00573 at 639.810 kb on + strand, within H281DRAFT_00573 at 639.811 kb on - strand, within H281DRAFT_00573 at 639.811 kb on - strand, within H281DRAFT_00573 at 639.811 kb on - strand, within H281DRAFT_00573 at 639.908 kb on - strand, within H281DRAFT_00573 at 639.991 kb on - strand at 640.043 kb on + strand at 640.044 kb on - strand at 640.325 kb on + strand, within H281DRAFT_00574 at 640.388 kb on + strand, within H281DRAFT_00574 at 640.452 kb on - strand, within H281DRAFT_00574 at 640.460 kb on + strand, within H281DRAFT_00574 at 640.460 kb on + strand, within H281DRAFT_00574 at 640.602 kb on + strand, within H281DRAFT_00574 at 640.603 kb on - strand, within H281DRAFT_00574 at 640.603 kb on - strand, within H281DRAFT_00574 at 640.737 kb on + strand, within H281DRAFT_00574 at 640.737 kb on + strand, within H281DRAFT_00574 at 640.737 kb on + strand, within H281DRAFT_00574 at 640.737 kb on + strand, within H281DRAFT_00574 at 640.738 kb on - strand, within H281DRAFT_00574 at 640.738 kb on - strand, within H281DRAFT_00574 at 640.763 kb on - strand, within H281DRAFT_00574 at 640.763 kb on - strand, within H281DRAFT_00574 at 640.763 kb on - strand, within H281DRAFT_00574 at 640.763 kb on - strand, within H281DRAFT_00574 at 640.968 kb on + strand at 640.968 kb on + strand at 640.968 kb on + strand at 640.969 kb on - strand at 640.996 kb on + strand at 640.997 kb on - strand at 640.997 kb on - strand at 641.019 kb on + strand at 641.057 kb on + strand at 641.057 kb on + strand at 641.057 kb on + strand at 641.057 kb on + strand at 641.058 kb on - strand at 641.058 kb on - strand at 641.058 kb on - strand at 641.060 kb on - strand at 641.234 kb on - strand, within H281DRAFT_00575 at 641.284 kb on + strand, within H281DRAFT_00575 at 641.462 kb on + strand at 641.462 kb on + strand at 641.462 kb on + strand at 641.567 kb on + strand at 641.567 kb on + strand at 641.567 kb on + strand at 641.567 kb on + strand at 641.604 kb on - strand at 641.678 kb on + strand at 641.679 kb on - strand at 641.689 kb on - strand at 641.809 kb on + strand, within H281DRAFT_00576
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 639,147 - H281DRAFT_00571 0.17 +0.6 639,298 - -2.3 639,311 - H281DRAFT_00572 0.27 -1.3 639,431 - -0.9 639,431 - -0.2 639,549 + -1.2 639,610 + H281DRAFT_00573 0.22 -1.7 639,611 - H281DRAFT_00573 0.22 -0.2 639,611 - -1.3 639,611 - H281DRAFT_00573 0.22 -3.9 639,613 + H281DRAFT_00573 0.23 -0.6 639,748 - H281DRAFT_00573 0.52 +0.1 639,799 + H281DRAFT_00573 0.63 -1.7 639,810 + H281DRAFT_00573 0.65 -1.0 639,811 - H281DRAFT_00573 0.65 -1.0 639,811 - H281DRAFT_00573 0.65 -0.5 639,811 - H281DRAFT_00573 0.65 -2.7 639,908 - H281DRAFT_00573 0.86 -1.8 639,991 - +1.1 640,043 + -0.0 640,044 - -0.8 640,325 + H281DRAFT_00574 0.37 +0.2 640,388 + H281DRAFT_00574 0.44 +0.1 640,452 - H281DRAFT_00574 0.51 -0.0 640,460 + H281DRAFT_00574 0.52 +0.6 640,460 + H281DRAFT_00574 0.52 +0.9 640,602 + H281DRAFT_00574 0.67 +1.4 640,603 - H281DRAFT_00574 0.67 -0.8 640,603 - H281DRAFT_00574 0.67 +0.5 640,737 + H281DRAFT_00574 0.82 +1.1 640,737 + H281DRAFT_00574 0.82 +0.2 640,737 + H281DRAFT_00574 0.82 +0.0 640,737 + H281DRAFT_00574 0.82 +0.0 640,738 - H281DRAFT_00574 0.82 +0.4 640,738 - H281DRAFT_00574 0.82 -0.5 640,763 - H281DRAFT_00574 0.85 -0.7 640,763 - H281DRAFT_00574 0.85 +0.7 640,763 - H281DRAFT_00574 0.85 +0.8 640,763 - H281DRAFT_00574 0.85 +0.2 640,968 + -0.1 640,968 + -0.0 640,968 + +0.8 640,969 - +1.5 640,996 + +0.6 640,997 - -1.0 640,997 - -0.9 641,019 + -1.1 641,057 + -1.4 641,057 + +0.9 641,057 + -1.2 641,057 + +0.1 641,058 - -0.3 641,058 - -1.0 641,058 - -0.1 641,060 - -0.2 641,234 - H281DRAFT_00575 0.48 -0.9 641,284 + H281DRAFT_00575 0.60 -0.2 641,462 + -0.4 641,462 + -0.8 641,462 + +0.3 641,567 + +1.0 641,567 + +0.5 641,567 + +1.1 641,567 + +0.2 641,604 - +0.5 641,678 + -0.8 641,679 - -0.1 641,689 - -0.8 641,809 + H281DRAFT_00576 0.14 -1.2
Or see this region's nucleotide sequence