Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00348

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00347 and H281DRAFT_00348 overlap by 4 nucleotidesH281DRAFT_00348 and H281DRAFT_00349 are separated by 11 nucleotides H281DRAFT_00347: H281DRAFT_00347 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 379,131 to 380,669 _00347 H281DRAFT_00348: H281DRAFT_00348 - membrane fusion protein, multidrug efflux system, at 380,666 to 381,742 _00348 H281DRAFT_00349: H281DRAFT_00349 - Arabinose efflux permease, at 381,754 to 383,229 _00349 Position (kb) 380 381 382Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 380.274 kb on - strand, within H281DRAFT_00347at 380.274 kb on - strand, within H281DRAFT_00347at 381.542 kb on - strand, within H281DRAFT_00348at 381.612 kb on + strand, within H281DRAFT_00348at 381.658 kb on + strandat 381.658 kb on + strandat 381.658 kb on + strandat 381.668 kb on + strandat 381.694 kb on - strandat 382.015 kb on - strand, within H281DRAFT_00349at 382.018 kb on + strand, within H281DRAFT_00349at 382.121 kb on - strand, within H281DRAFT_00349at 382.185 kb on - strand, within H281DRAFT_00349

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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380,274 - H281DRAFT_00347 0.74 -0.4
380,274 - H281DRAFT_00347 0.74 -3.2
381,542 - H281DRAFT_00348 0.81 +3.1
381,612 + H281DRAFT_00348 0.88 +0.3
381,658 + +1.3
381,658 + +0.2
381,658 + -0.9
381,668 + +0.2
381,694 - -1.7
382,015 - H281DRAFT_00349 0.18 -1.5
382,018 + H281DRAFT_00349 0.18 -0.1
382,121 - H281DRAFT_00349 0.25 +1.7
382,185 - H281DRAFT_00349 0.29 -0.6

Or see this region's nucleotide sequence