Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00015

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00014 and H281DRAFT_00015 are separated by 891 nucleotidesH281DRAFT_00015 and H281DRAFT_00016 are separated by 283 nucleotides H281DRAFT_00014: H281DRAFT_00014 - FAD/FMN-containing dehydrogenases, at 13,253 to 14,596 _00014 H281DRAFT_00015: H281DRAFT_00015 - hypothetical protein, at 15,488 to 15,649 _00015 H281DRAFT_00016: H281DRAFT_00016 - beta-glucosidase, at 15,933 to 18,224 _00016 Position (kb) 15 16Strain fitness (log2 ratio) -3 -2 -1 0 1at 14.509 kb on - strandat 14.663 kb on + strandat 14.665 kb on + strandat 14.666 kb on - strandat 14.666 kb on - strandat 14.666 kb on - strandat 14.683 kb on - strandat 14.686 kb on + strandat 14.687 kb on - strandat 14.694 kb on - strandat 14.746 kb on - strandat 14.754 kb on + strandat 14.754 kb on + strandat 14.770 kb on + strandat 14.770 kb on + strandat 14.771 kb on - strandat 14.864 kb on + strandat 14.864 kb on + strandat 14.864 kb on + strandat 15.161 kb on + strandat 15.162 kb on - strandat 15.162 kb on - strandat 15.182 kb on + strandat 15.183 kb on - strandat 15.262 kb on - strandat 15.395 kb on + strandat 15.396 kb on - strandat 15.396 kb on - strandat 15.540 kb on + strand, within H281DRAFT_00015at 15.601 kb on - strand, within H281DRAFT_00015at 15.643 kb on - strandat 15.719 kb on + strandat 15.754 kb on + strandat 15.754 kb on + strandat 15.759 kb on - strandat 15.891 kb on - strandat 16.079 kb on + strandat 16.079 kb on + strandat 16.079 kb on + strandat 16.079 kb on + strandat 16.235 kb on + strand, within H281DRAFT_00016at 16.473 kb on + strand, within H281DRAFT_00016at 16.570 kb on + strand, within H281DRAFT_00016at 16.641 kb on + strand, within H281DRAFT_00016

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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14,509 - +0.3
14,663 + -0.1
14,665 + -0.2
14,666 - +0.9
14,666 - +0.4
14,666 - +0.2
14,683 - +0.1
14,686 + +0.3
14,687 - -0.3
14,694 - +0.2
14,746 - -1.8
14,754 + -2.6
14,754 + -2.0
14,770 + -0.1
14,770 + -0.6
14,771 - +0.8
14,864 + -1.4
14,864 + +0.3
14,864 + -3.2
15,161 + +0.4
15,162 - -1.6
15,162 - +0.1
15,182 + -0.5
15,183 - +0.3
15,262 - +0.1
15,395 + -0.5
15,396 - +0.8
15,396 - +0.3
15,540 + H281DRAFT_00015 0.32 +1.4
15,601 - H281DRAFT_00015 0.70 +0.0
15,643 - -0.3
15,719 + +0.6
15,754 + +0.5
15,754 + -2.0
15,759 - -1.8
15,891 - +0.7
16,079 + +0.7
16,079 + -0.1
16,079 + +0.4
16,079 + +0.2
16,235 + H281DRAFT_00016 0.13 -1.1
16,473 + H281DRAFT_00016 0.24 +0.2
16,570 + H281DRAFT_00016 0.28 -0.8
16,641 + H281DRAFT_00016 0.31 +0.2

Or see this region's nucleotide sequence